Wall clock time and date at job start Mon Mar 30 2020 01:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38224 * 119.61972 * 124.72871 * 3 2 1 5 5 C 1.38627 * 119.15930 * 179.75812 * 4 3 2 6 6 C 1.38669 * 118.42261 * 0.50179 * 5 4 3 7 7 C 1.38190 * 119.16123 * 359.73768 * 6 5 4 8 8 C 1.50703 * 119.61627 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.46920 * 125.02092 * 8 7 6 10 10 H 1.07994 * 120.00318 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99302 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00422 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99608 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47054 * 90.00098 * 13 11 9 15 15 H 1.48500 * 109.47229 * 210.00105 * 13 11 9 16 16 H 1.48498 * 109.47171 * 330.00245 * 13 11 9 17 17 N 1.31855 * 119.61255 * 304.99637 * 3 2 1 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 21 21 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 22 22 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 23 23 H 1.07995 * 120.42094 * 359.97384 * 4 3 2 24 24 H 1.08000 * 120.78874 * 180.21864 * 5 4 3 25 25 H 1.07996 * 120.42049 * 179.75914 * 6 5 4 26 26 H 1.08997 * 109.46288 * 245.01855 * 8 7 6 27 27 H 1.08999 * 109.46906 * 5.01695 * 8 7 6 28 28 H 0.96998 * 120.00082 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9055 1.8367 0.9876 5 6 3.3656 3.1444 0.9755 6 6 2.9200 3.9916 -0.0278 7 6 2.0427 3.5062 -0.9788 8 6 1.5525 4.4178 -2.0741 9 6 1.8433 3.7939 -3.4147 10 1 2.3344 2.8336 -3.4682 11 6 1.4823 4.4493 -4.5728 12 7 0.8847 5.6190 -4.5076 13 14 1.8434 3.6763 -6.2346 14 1 0.6937 2.8325 -6.6484 15 1 2.0600 4.7460 -7.2416 16 1 3.0636 2.8359 -6.1350 17 7 1.6297 2.2543 -0.9391 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.8934 -0.5137 0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 3.2279 1.1507 1.7568 24 1 4.0511 3.4962 1.7322 25 1 3.2547 5.0177 -0.0658 26 1 0.4780 4.5674 -1.9683 27 1 2.0620 5.3787 -2.0022 28 1 0.6311 6.0801 -5.3224 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259921983.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:22 Heat of formation + Delta-G solvation = -7.279507 kcal Electronic energy + Delta-G solvation = -11260.894700 eV Core-core repulsion = 9275.164076 eV Total energy + Delta-G solvation = -1985.730623 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.06447 -35.90319 -34.76379 -33.34189 -31.56285 -29.22368 -25.88375 -25.01708 -22.59201 -22.01923 -18.53658 -17.21360 -17.06458 -16.56319 -15.88795 -15.38445 -14.77902 -14.50944 -13.95749 -13.88763 -13.49455 -13.02448 -12.90833 -12.61767 -12.57357 -12.23528 -11.91353 -11.68063 -11.51894 -10.66487 -10.55024 -9.99267 -9.54138 -8.21660 -6.30870 0.35884 0.56941 1.37281 1.39635 1.50517 2.39734 3.01114 3.12044 3.51698 3.90460 4.10907 4.30634 4.39904 4.44327 4.57708 4.60497 4.95550 4.99116 5.07750 5.12874 5.23922 5.33486 5.37241 5.43469 5.61066 5.72320 6.00572 6.18520 6.77665 7.34359 7.43828 8.89747 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.039110 B = 0.010540 C = 0.009134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.761751 B = 2655.830170 C = 3064.568454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C 0.104 3.896 4 C -0.189 4.189 5 C -0.068 4.068 6 C -0.200 4.200 7 C 0.136 3.864 8 C 0.067 3.933 9 C -0.516 4.516 10 H 0.048 0.952 11 C 0.002 3.998 12 N -0.931 5.931 13 Si 0.967 3.033 14 H -0.273 1.273 15 H -0.275 1.275 16 H -0.269 1.269 17 N -0.508 5.508 18 H 0.080 0.920 19 H 0.033 0.967 20 H 0.050 0.950 21 H 0.111 0.889 22 H 0.073 0.927 23 H 0.169 0.831 24 H 0.170 0.830 25 H 0.136 0.864 26 H 0.005 0.995 27 H 0.021 0.979 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -8.903 11.052 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C -0.035 4.035 4 C -0.208 4.208 5 C -0.093 4.093 6 C -0.220 4.220 7 C -0.001 4.001 8 C 0.029 3.971 9 C -0.554 4.554 10 H 0.066 0.934 11 C -0.195 4.195 12 N -0.572 5.572 13 Si 0.791 3.209 14 H -0.199 1.199 15 H -0.200 1.200 16 H -0.194 1.194 17 N -0.219 5.219 18 H 0.099 0.901 19 H 0.052 0.948 20 H 0.069 0.931 21 H 0.130 0.870 22 H 0.092 0.908 23 H 0.186 0.814 24 H 0.187 0.813 25 H 0.154 0.846 26 H 0.023 0.977 27 H 0.039 0.961 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.371 -9.047 10.310 14.125 hybrid contribution 0.430 0.546 -0.551 0.887 sum 3.801 -8.501 9.759 13.490 Atomic orbital electron populations 1.21615 0.94641 1.02284 1.01134 1.20550 0.96706 0.89258 1.03983 1.22010 0.93849 0.97078 0.90530 1.22260 0.99936 0.97609 1.01036 1.21917 0.97343 0.93169 0.96921 1.22163 1.00666 1.02225 0.96967 1.21759 0.92722 0.91215 0.94373 1.18024 0.95096 0.92730 0.91220 1.21233 1.38510 1.04482 0.91183 0.93388 1.25893 0.94908 0.95430 1.03284 1.70061 1.41940 1.15626 1.29559 0.85428 0.78727 0.78179 0.78575 1.19902 1.19988 1.19373 1.67275 1.25881 1.04045 1.24665 0.90068 0.94814 0.93091 0.87045 0.90835 0.81361 0.81304 0.84623 0.97701 0.96095 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.77 71.98 0.70 -3.07 15 2 C -0.07 -1.79 6.33 29.85 0.19 -1.60 15 3 C 0.10 3.65 6.18 42.55 0.26 3.91 15 4 C -0.19 -5.30 9.71 22.36 0.22 -5.08 15 5 C -0.07 -1.97 10.18 22.47 0.23 -1.74 15 6 C -0.20 -7.66 9.71 22.36 0.22 -7.44 15 7 C 0.14 6.50 6.13 42.54 0.26 6.76 15 8 C 0.07 3.79 5.37 29.10 0.16 3.94 15 9 C -0.52 -31.30 8.91 25.60 0.23 -31.07 15 10 H 0.05 2.94 7.68 -2.91 -0.02 2.92 15 11 C 0.00 0.15 5.46 84.66 0.46 0.61 15 12 N -0.93 -57.72 13.29 21.45 0.28 -57.43 15 13 Si 0.97 46.37 29.54 68.60 2.03 48.40 15 14 H -0.27 -12.77 7.11 99.48 0.71 -12.06 15 15 H -0.27 -12.56 7.11 99.48 0.71 -11.86 15 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 17 N -0.51 -23.39 9.48 -172.06 -1.63 -25.02 15 18 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 19 H 0.03 1.15 7.95 -2.39 -0.02 1.13 15 20 H 0.05 1.33 8.14 -2.38 -0.02 1.31 15 21 H 0.11 2.02 7.87 -2.39 -0.02 2.01 15 22 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.17 3.11 7.95 -2.91 -0.02 3.09 15 24 H 0.17 3.32 8.06 -2.91 -0.02 3.29 15 25 H 0.14 4.78 7.95 -2.91 -0.02 4.75 15 26 H 0.00 0.30 8.14 -2.39 -0.02 0.28 15 27 H 0.02 1.20 7.87 -2.39 -0.02 1.18 15 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 Total: -1.00 -71.13 247.57 4.73 -66.40 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 1.12 Total: 2.45 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 2.93 Total: -34.80 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.35 Total: -82.45 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -71.13 4.73 -66.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921983.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.122 kcal (2) G-P(sol) polarization free energy of solvation -71.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds