Wall clock time and date at job start Mon Mar 30 2020 01:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38674 * 120.78851 * 2 1 4 4 C 1.38186 * 119.16476 * 180.02562 * 3 2 1 5 5 N 1.31890 * 120.76046 * 359.74853 * 4 3 2 6 6 C 1.31850 * 121.72940 * 0.52379 * 5 4 3 7 7 C 1.50699 * 119.62379 * 179.75274 * 6 5 4 8 8 H 1.09000 * 109.46916 * 334.72696 * 7 6 5 9 9 C 1.52997 * 109.47592 * 214.72511 * 7 6 5 10 10 C 1.50706 * 109.46824 * 94.72029 * 7 6 5 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 7 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 7 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.38231 * 120.76315 * 359.47432 * 6 5 4 19 19 H 1.09000 * 109.47080 * 269.97182 * 1 2 3 20 20 H 1.08996 * 109.47315 * 29.97589 * 1 2 3 21 21 H 1.09003 * 109.47259 * 149.97504 * 1 2 3 22 22 H 1.07997 * 120.42141 * 0.02562 * 3 2 1 23 23 H 1.07991 * 119.61986 * 180.02562 * 4 3 2 24 24 H 1.09000 * 109.47140 * 300.00047 * 9 7 6 25 25 H 1.09002 * 109.47045 * 59.99955 * 9 7 6 26 26 H 1.09001 * 109.46922 * 179.97438 * 9 7 6 27 27 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 28 28 H 1.07992 * 120.42285 * 180.23424 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0001 0.0039 6 6 3.5984 -1.1516 -0.0012 7 6 4.3800 -2.4400 -0.0014 8 1 5.3646 -2.2675 -0.4361 9 6 3.6341 -3.4890 -0.8283 10 6 4.5353 -2.9335 1.4141 11 1 4.1102 -2.3706 2.2319 12 6 5.2203 -4.1035 1.6649 13 7 5.3553 -4.5344 2.9001 14 14 5.9563 -5.0767 0.2505 15 1 4.9593 -6.0585 -0.2466 16 1 6.3277 -4.1490 -0.8481 17 1 7.1670 -5.7959 0.7216 18 6 2.2166 -1.1909 -0.0007 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3634 -0.8898 -0.5142 22 1 1.6967 2.1378 0.0004 23 1 4.1582 2.0754 -0.0001 24 1 2.6495 -3.6615 -0.3937 25 1 3.5218 -3.1321 -1.8521 26 1 4.1998 -4.4208 -0.8288 27 1 5.8369 -5.3578 3.0766 28 1 1.6965 -2.1373 -0.0011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925253.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:05 Heat of formation + Delta-G solvation = 4.054803 kcal Electronic energy + Delta-G solvation = -11501.367065 eV Core-core repulsion = 9516.127934 eV Total energy + Delta-G solvation = -1985.239131 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.12929 -36.62249 -34.68838 -33.80529 -30.69078 -28.56559 -27.18365 -25.02222 -23.24666 -21.19094 -18.84007 -17.39439 -17.24123 -16.67740 -15.90174 -15.12543 -14.86037 -14.83408 -14.13488 -13.69069 -13.47934 -13.43479 -13.11953 -12.78785 -12.74792 -11.99854 -11.90997 -11.40844 -11.34185 -10.76676 -10.28173 -10.16303 -9.67054 -8.32793 -6.38144 0.37321 0.48871 1.29755 1.37542 1.48343 2.31272 2.99995 3.02192 3.58738 3.90246 3.96612 4.30219 4.39851 4.49360 4.58492 4.71824 4.76329 4.82426 4.89259 5.05807 5.11363 5.15618 5.28007 5.52281 5.58260 5.61281 5.97973 6.23645 6.64790 7.25251 7.32183 8.84258 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.052890 B = 0.010900 C = 0.010624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.277952 B = 2568.258607 C = 2634.809736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.050 4.050 3 C -0.190 4.190 4 C 0.084 3.916 5 N -0.533 5.533 6 C 0.149 3.851 7 C 0.048 3.952 8 H 0.029 0.971 9 C -0.141 4.141 10 C -0.509 4.509 11 H 0.022 0.978 12 C 0.015 3.985 13 N -0.948 5.948 14 Si 0.955 3.045 15 H -0.255 1.255 16 H -0.252 1.252 17 H -0.296 1.296 18 C -0.187 4.187 19 H 0.081 0.919 20 H 0.094 0.906 21 H 0.076 0.924 22 H 0.168 0.832 23 H 0.177 0.823 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.268 0.732 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 8.160 -9.330 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.057 4.057 3 C -0.209 4.209 4 C -0.072 4.072 5 N -0.244 5.244 6 C 0.013 3.987 7 C 0.029 3.971 8 H 0.048 0.952 9 C -0.199 4.199 10 C -0.547 4.547 11 H 0.041 0.959 12 C -0.183 4.183 13 N -0.588 5.588 14 Si 0.781 3.219 15 H -0.180 1.180 16 H -0.176 1.176 17 H -0.224 1.224 18 C -0.207 4.207 19 H 0.100 0.900 20 H 0.112 0.888 21 H 0.095 0.905 22 H 0.186 0.814 23 H 0.194 0.806 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.253 8.035 -9.216 14.752 hybrid contribution -0.101 -0.657 0.192 0.692 sum -8.355 7.378 -9.024 14.341 Atomic orbital electron populations 1.20855 0.87593 1.04477 1.03537 1.20790 0.98593 0.92327 0.94040 1.22290 0.94998 0.99620 1.04020 1.23270 0.93207 0.95911 0.94833 1.67464 1.43067 0.99200 1.14638 1.21411 0.92191 0.93386 0.91697 1.18130 0.94709 0.89128 0.95157 0.95245 1.22116 1.00838 0.97929 0.98970 1.20927 1.35105 1.07416 0.91257 0.95947 1.25867 0.95731 0.98258 0.98395 1.70039 1.43597 1.23608 1.21521 0.85754 0.77623 0.79066 0.79454 1.18043 1.17628 1.22363 1.22032 0.94429 1.00005 1.04226 0.90044 0.88771 0.90524 0.81434 0.80641 0.91644 0.91910 0.94235 0.92265 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 10.06 71.23 0.72 -1.44 15 2 C -0.05 -1.47 5.92 -19.67 -0.12 -1.59 15 3 C -0.19 -5.23 9.82 22.36 0.22 -5.01 15 4 C 0.08 2.81 11.18 84.67 0.95 3.76 15 5 N -0.53 -23.51 10.27 -183.89 -1.89 -25.40 15 6 C 0.15 6.79 5.73 42.55 0.24 7.04 15 7 C 0.05 2.42 2.21 -12.29 -0.03 2.39 15 8 H 0.03 1.55 7.20 -2.39 -0.02 1.54 15 9 C -0.14 -5.95 8.10 71.98 0.58 -5.36 15 10 C -0.51 -30.55 9.13 25.60 0.23 -30.32 15 11 H 0.02 1.51 7.98 -2.91 -0.02 1.49 15 12 C 0.01 0.88 5.45 84.66 0.46 1.34 15 13 N -0.95 -60.55 13.96 21.45 0.30 -60.25 15 14 Si 0.96 45.78 24.38 68.60 1.67 47.45 15 15 H -0.25 -11.23 6.87 99.48 0.68 -10.54 15 16 H -0.25 -11.49 6.53 99.48 0.65 -10.84 15 17 H -0.30 -14.07 7.11 99.48 0.71 -13.36 15 18 C -0.19 -7.12 8.89 22.36 0.20 -6.92 15 19 H 0.08 1.53 8.14 -2.39 -0.02 1.51 15 20 H 0.09 1.36 8.10 -2.39 -0.02 1.34 15 21 H 0.08 1.42 8.10 -2.39 -0.02 1.40 15 22 H 0.17 3.07 8.06 -2.91 -0.02 3.05 15 23 H 0.18 4.48 8.06 -2.92 -0.02 4.46 15 24 H 0.06 2.60 6.49 -2.39 -0.02 2.58 15 25 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 26 H 0.04 1.69 3.28 -2.39 -0.01 1.68 15 27 H 0.27 15.92 8.31 -92.70 -0.77 15.15 15 28 H 0.14 4.91 6.31 -2.91 -0.02 4.89 15 Total: -1.00 -72.35 233.75 4.60 -67.75 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.06 Total: 6.57 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 3.46 Total: -36.12 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -1.59 Total: -85.65 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal Total: -72.35 4.60 -67.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925253.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.804 kcal (2) G-P(sol) polarization free energy of solvation -72.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds