Wall clock time and date at job start Mon Mar 30 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38053 * 120.28484 * 2 1 4 4 C 1.41078 * 118.19690 * 179.75309 * 3 2 1 5 5 C 1.41408 * 120.66477 * 180.28311 * 4 3 2 6 6 H 1.08003 * 119.99857 * 205.19504 * 5 4 3 7 7 C 1.39952 * 120.00000 * 25.19487 * 5 4 3 8 8 N 1.30819 * 119.99785 * 13.97272 * 7 5 4 9 9 Si 1.86803 * 119.99807 * 193.97645 * 7 5 4 10 10 H 1.48497 * 109.47013 * 60.00215 * 9 7 5 11 11 H 1.48502 * 109.46967 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46929 * 299.99851 * 9 7 5 13 13 C 1.40753 * 118.67239 * 0.52877 * 4 3 2 14 14 C 1.50692 * 119.80063 * 179.73789 * 13 4 3 15 15 N 1.31469 * 120.40004 * 359.45579 * 13 4 3 16 16 C 1.32093 * 121.98156 * 0.27989 * 15 13 4 17 17 C 1.50701 * 119.33867 * 179.97438 * 16 15 13 18 18 H 1.09005 * 109.47315 * 269.97911 * 1 2 3 19 19 H 1.08999 * 109.47309 * 29.97834 * 1 2 3 20 20 H 1.08995 * 109.47530 * 149.97935 * 1 2 3 21 21 H 1.07998 * 120.90364 * 0.02562 * 3 2 1 22 22 H 0.97006 * 119.99366 * 179.97438 * 8 7 5 23 23 H 1.09009 * 109.47217 * 269.72813 * 14 13 4 24 24 H 1.09001 * 109.47599 * 29.72353 * 14 13 4 25 25 H 1.09002 * 109.47555 * 149.72345 * 14 13 4 26 26 H 1.09000 * 109.46750 * 90.00291 * 17 16 15 27 27 H 1.09006 * 109.47148 * 209.99783 * 17 16 15 28 28 H 1.08994 * 109.47129 * 330.00106 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2032 1.1921 0.0000 4 6 3.6130 1.1407 0.0054 5 6 4.3780 2.3300 0.0116 6 1 5.3835 2.3273 -0.3826 7 6 3.8322 3.5104 0.5287 8 7 2.7398 3.4661 1.2470 9 14 4.6636 5.1492 0.1931 10 1 4.7130 5.3883 -1.2717 11 1 3.8934 6.2380 0.8462 12 1 6.0450 5.1240 0.7375 13 6 4.2429 -0.1180 -0.0010 14 6 5.7475 -0.2025 -0.0014 15 7 3.5266 -1.2204 -0.0009 16 6 2.2059 -1.1966 -0.0004 17 6 1.4440 -2.4968 -0.0009 18 1 -0.3634 -0.0004 1.0277 19 1 -0.3634 0.8902 -0.5135 20 1 -0.3634 -0.8897 -0.5141 21 1 1.6827 2.1384 0.0004 22 1 2.3617 4.2843 1.6057 23 1 6.1100 -0.2226 -1.0293 24 1 6.1604 0.6656 0.5124 25 1 6.0606 -1.1115 0.5121 26 1 1.2606 -2.8108 1.0266 27 1 0.4922 -2.3600 -0.5143 28 1 2.0279 -3.2599 -0.5153 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259937291.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:07 Heat of formation + Delta-G solvation = 2.430249 kcal Electronic energy + Delta-G solvation = -11603.977067 eV Core-core repulsion = 9618.667491 eV Total energy + Delta-G solvation = -1985.309577 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.64014 -34.31977 -33.07049 -31.03730 -28.45793 -28.01412 -25.26373 -23.26962 -20.87335 -19.61522 -16.96049 -15.65114 -14.74192 -14.06298 -13.65980 -13.32041 -12.52744 -12.30668 -12.13706 -12.04787 -11.53238 -11.42306 -11.39513 -11.00780 -10.89071 -10.78272 -10.62589 -10.40154 -9.57206 -9.32758 -8.04505 -7.86673 -7.23854 -6.77924 -4.42867 2.63103 2.95667 3.02527 3.05315 3.21243 3.87076 4.58362 5.53779 5.69830 5.98500 6.04869 6.17347 6.29481 6.42355 6.47700 6.54250 6.60518 6.68770 6.72657 6.86415 7.01119 7.16680 7.27059 7.41753 7.79414 7.93004 8.05430 8.47921 8.72829 8.79308 9.72650 10.11507 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.044712 B = 0.013117 C = 0.010448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.079082 B = 2134.093518 C = 2679.169537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.124 4.124 3 C -0.132 4.132 4 C 0.065 3.935 5 C -0.448 4.448 6 H 0.083 0.917 7 C 0.073 3.927 8 N -0.795 5.795 9 Si 0.913 3.087 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.264 1.264 13 C 0.005 3.995 14 C -0.070 4.070 15 N -0.467 5.467 16 C -0.010 4.010 17 C -0.076 4.076 18 H 0.055 0.945 19 H 0.052 0.948 20 H 0.056 0.944 21 H 0.129 0.871 22 H 0.282 0.718 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 -0.792 -1.385 2.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.126 4.126 3 C -0.157 4.157 4 C 0.061 3.939 5 C -0.478 4.478 6 H 0.101 0.899 7 C -0.145 4.145 8 N -0.420 5.420 9 Si 0.737 3.263 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.188 1.188 13 C -0.138 4.138 14 C -0.128 4.128 15 N -0.176 5.176 16 C -0.148 4.148 17 C -0.134 4.134 18 H 0.074 0.926 19 H 0.071 0.929 20 H 0.075 0.925 21 H 0.146 0.854 22 H 0.093 0.907 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.098 -1.441 -1.239 2.195 hybrid contribution -0.172 1.719 0.012 1.728 sum -1.270 0.278 -1.228 1.788 Atomic orbital electron populations 1.20639 0.93227 1.00933 1.00820 1.20255 0.95094 0.94391 1.02906 1.21599 0.94131 0.96475 1.03543 1.18324 0.92587 0.92912 0.90052 1.19535 1.00953 0.92501 1.34843 0.89871 1.25972 0.94595 1.01343 0.92603 1.69783 1.18321 1.30451 1.23484 0.86291 0.80077 0.80114 0.79837 1.18785 1.20305 1.18848 1.21022 0.94907 0.88431 1.09408 1.20245 0.91390 1.00980 1.00190 1.66597 1.07138 1.32526 1.11363 1.20087 0.89563 0.93250 1.11862 1.20343 0.98123 0.94563 1.00362 0.92598 0.92926 0.92522 0.85363 0.90708 0.93493 0.91532 0.93377 0.93324 0.92555 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 9.61 36.00 0.35 -1.53 15 2 C -0.12 -2.97 5.89 -104.57 -0.62 -3.59 15 3 C -0.13 -3.47 8.47 -38.57 -0.33 -3.80 15 4 C 0.07 1.77 5.59 -106.66 -0.60 1.18 15 5 C -0.45 -11.68 8.17 -37.73 -0.31 -11.99 15 6 H 0.08 2.05 6.84 -52.48 -0.36 1.69 15 7 C 0.07 1.79 5.24 -17.34 -0.09 1.70 15 8 N -0.79 -20.28 10.82 55.55 0.60 -19.68 15 9 Si 0.91 18.31 29.58 -169.99 -5.03 13.28 15 10 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 11 H -0.28 -5.45 7.11 56.52 0.40 -5.05 15 12 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 13 C 0.00 0.12 6.86 -81.80 -0.56 -0.44 15 14 C -0.07 -1.54 9.59 36.00 0.35 -1.20 15 15 N -0.47 -12.03 10.16 -5.08 -0.05 -12.09 15 16 C -0.01 -0.23 6.79 -82.35 -0.56 -0.79 15 17 C -0.08 -1.45 9.75 36.01 0.35 -1.10 15 18 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 19 H 0.05 0.95 8.09 -51.93 -0.42 0.53 15 20 H 0.06 0.94 5.93 -51.93 -0.31 0.63 15 21 H 0.13 3.43 6.18 -52.49 -0.32 3.11 15 22 H 0.28 6.55 8.30 -40.82 -0.34 6.21 15 23 H 0.05 0.94 8.14 -51.92 -0.42 0.52 15 24 H 0.07 1.42 6.74 -51.93 -0.35 1.07 15 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 26 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 27 H 0.06 0.94 5.91 -51.93 -0.31 0.63 15 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 LS Contribution 236.54 15.07 3.56 3.56 Total: -1.00 -28.42 236.54 -6.25 -34.66 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -3.32 Total: 1.82 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -2.02 Total: -21.57 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.55 Total: -31.76 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.42 -6.25 -34.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937291.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.095 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds