Wall clock time and date at job start Mon Mar 30 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38053 * 120.28484 * 2 1 4 4 C 1.41078 * 118.19690 * 179.75309 * 3 2 1 5 5 C 1.41408 * 120.66477 * 180.28311 * 4 3 2 6 6 H 1.08003 * 119.99857 * 205.19504 * 5 4 3 7 7 C 1.39952 * 120.00000 * 25.19487 * 5 4 3 8 8 N 1.30819 * 119.99785 * 13.97272 * 7 5 4 9 9 Si 1.86803 * 119.99807 * 193.97645 * 7 5 4 10 10 H 1.48497 * 109.47013 * 60.00215 * 9 7 5 11 11 H 1.48502 * 109.46967 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46929 * 299.99851 * 9 7 5 13 13 C 1.40753 * 118.67239 * 0.52877 * 4 3 2 14 14 C 1.50692 * 119.80063 * 179.73789 * 13 4 3 15 15 N 1.31469 * 120.40004 * 359.45579 * 13 4 3 16 16 C 1.32093 * 121.98156 * 0.27989 * 15 13 4 17 17 C 1.50701 * 119.33867 * 179.97438 * 16 15 13 18 18 H 1.09005 * 109.47315 * 269.97911 * 1 2 3 19 19 H 1.08999 * 109.47309 * 29.97834 * 1 2 3 20 20 H 1.08995 * 109.47530 * 149.97935 * 1 2 3 21 21 H 1.07998 * 120.90364 * 0.02562 * 3 2 1 22 22 H 0.97006 * 119.99366 * 179.97438 * 8 7 5 23 23 H 1.09009 * 109.47217 * 269.72813 * 14 13 4 24 24 H 1.09001 * 109.47599 * 29.72353 * 14 13 4 25 25 H 1.09002 * 109.47555 * 149.72345 * 14 13 4 26 26 H 1.09000 * 109.46750 * 90.00291 * 17 16 15 27 27 H 1.09006 * 109.47148 * 209.99783 * 17 16 15 28 28 H 1.08994 * 109.47129 * 330.00106 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2032 1.1921 0.0000 4 6 3.6130 1.1407 0.0054 5 6 4.3780 2.3300 0.0116 6 1 5.3835 2.3273 -0.3826 7 6 3.8322 3.5104 0.5287 8 7 2.7398 3.4661 1.2470 9 14 4.6636 5.1492 0.1931 10 1 4.7130 5.3883 -1.2717 11 1 3.8934 6.2380 0.8462 12 1 6.0450 5.1240 0.7375 13 6 4.2429 -0.1180 -0.0010 14 6 5.7475 -0.2025 -0.0014 15 7 3.5266 -1.2204 -0.0009 16 6 2.2059 -1.1966 -0.0004 17 6 1.4440 -2.4968 -0.0009 18 1 -0.3634 -0.0004 1.0277 19 1 -0.3634 0.8902 -0.5135 20 1 -0.3634 -0.8897 -0.5141 21 1 1.6827 2.1384 0.0004 22 1 2.3617 4.2843 1.6057 23 1 6.1100 -0.2226 -1.0293 24 1 6.1604 0.6656 0.5124 25 1 6.0606 -1.1115 0.5121 26 1 1.2606 -2.8108 1.0266 27 1 0.4922 -2.3600 -0.5143 28 1 2.0279 -3.2599 -0.5153 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259937291.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:07 Heat of formation + Delta-G solvation = -13.936787 kcal Electronic energy + Delta-G solvation = -11604.686795 eV Core-core repulsion = 9618.667491 eV Total energy + Delta-G solvation = -1986.019305 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.50773 -36.17255 -34.86987 -32.88971 -30.17819 -29.75597 -27.04606 -25.04296 -22.76164 -21.46906 -18.86390 -17.47411 -16.53676 -15.84112 -15.38792 -15.08363 -14.19032 -14.03129 -13.79615 -13.54476 -13.31412 -13.16365 -13.12051 -12.64503 -12.59251 -12.46782 -12.27860 -12.06818 -11.39001 -11.14924 -9.97526 -9.79654 -9.11296 -8.62814 -6.38329 0.78063 1.07207 1.38761 1.50209 1.54085 2.19093 2.72191 3.63474 3.98142 4.35829 4.48333 4.54808 4.62675 4.79220 4.83731 4.94645 5.02982 5.06364 5.10283 5.18317 5.22554 5.31675 5.45595 5.57897 5.91049 6.02188 6.15412 6.56163 6.80883 6.87122 7.80131 8.29143 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.044712 B = 0.013117 C = 0.010448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.079082 B = 2134.093518 C = 2679.169537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.133 4.133 3 C -0.159 4.159 4 C 0.033 3.967 5 C -0.477 4.477 6 H 0.088 0.912 7 C 0.032 3.968 8 N -0.826 5.826 9 Si 0.988 3.012 10 H -0.260 1.260 11 H -0.269 1.269 12 H -0.257 1.257 13 C -0.022 4.022 14 C -0.063 4.063 15 N -0.484 5.484 16 C -0.024 4.024 17 C -0.071 4.071 18 H 0.067 0.933 19 H 0.056 0.944 20 H 0.086 0.914 21 H 0.116 0.884 22 H 0.289 0.711 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -0.844 -1.601 2.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C -0.186 4.186 4 C 0.029 3.971 5 C -0.507 4.507 6 H 0.106 0.894 7 C -0.183 4.183 8 N -0.452 5.452 9 Si 0.808 3.192 10 H -0.184 1.184 11 H -0.193 1.193 12 H -0.181 1.181 13 C -0.164 4.164 14 C -0.121 4.121 15 N -0.194 5.194 16 C -0.162 4.162 17 C -0.129 4.129 18 H 0.085 0.915 19 H 0.075 0.925 20 H 0.104 0.896 21 H 0.133 0.867 22 H 0.100 0.900 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.472 -1.512 -1.454 2.562 hybrid contribution -0.121 1.650 0.094 1.657 sum -1.592 0.138 -1.360 2.099 Atomic orbital electron populations 1.20671 0.89738 1.02634 1.02011 1.20772 0.97814 0.93585 1.01325 1.21682 0.94404 0.97059 1.05409 1.18736 0.93404 0.93981 0.91011 1.19802 1.01470 0.93342 1.36064 0.89440 1.26864 0.95104 1.04678 0.91677 1.69844 1.19572 1.31796 1.23959 0.85162 0.79146 0.75227 0.79681 1.18434 1.19323 1.18067 1.21586 0.96771 0.88359 1.09674 1.20220 0.89198 1.01444 1.01201 1.66716 1.08213 1.32448 1.11979 1.20974 0.89541 0.95442 1.10267 1.20411 0.98706 0.92012 1.01733 0.91481 0.92478 0.89582 0.86667 0.90006 0.92106 0.91619 0.92244 0.91956 0.89801 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.35 9.61 71.23 0.68 -2.67 15 2 C -0.13 -6.29 5.89 -19.83 -0.12 -6.41 15 3 C -0.16 -8.58 8.47 22.92 0.19 -8.39 15 4 C 0.03 1.82 5.59 -21.19 -0.12 1.70 15 5 C -0.48 -25.33 8.17 23.47 0.19 -25.14 15 6 H 0.09 4.38 6.84 -2.91 -0.02 4.36 15 7 C 0.03 1.57 5.24 85.26 0.45 2.02 15 8 N -0.83 -42.72 10.82 21.83 0.24 -42.49 15 9 Si 0.99 37.31 29.58 68.60 2.03 39.34 15 10 H -0.26 -9.61 7.11 99.48 0.71 -8.91 15 11 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 12 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 13 C -0.02 -1.17 6.86 43.23 0.30 -0.87 15 14 C -0.06 -2.76 9.59 71.23 0.68 -2.08 15 15 N -0.48 -24.84 10.16 -169.99 -1.73 -26.56 15 16 C -0.02 -1.14 6.79 42.60 0.29 -0.85 15 17 C -0.07 -2.51 9.75 71.24 0.69 -1.82 15 18 H 0.07 2.27 8.14 -2.38 -0.02 2.25 15 19 H 0.06 1.98 8.09 -2.39 -0.02 1.96 15 20 H 0.09 2.55 5.93 -2.39 -0.01 2.53 15 21 H 0.12 6.36 6.18 -2.91 -0.02 6.35 15 22 H 0.29 13.52 8.30 -92.70 -0.77 12.75 15 23 H 0.06 2.43 8.14 -2.38 -0.02 2.41 15 24 H 0.06 2.82 6.74 -2.39 -0.02 2.80 15 25 H 0.06 2.39 8.14 -2.39 -0.02 2.37 15 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 27 H 0.08 2.46 5.91 -2.38 -0.01 2.44 15 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 Total: -1.00 -61.41 236.54 4.94 -56.47 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 1.15 Total: 17.74 kcal Atomic # 6 Polarization: -47.76 SS G_CDS: 3.25 Total: -44.51 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -1.49 Total: -69.05 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -61.41 4.94 -56.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937291.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.536 kcal (2) G-P(sol) polarization free energy of solvation -61.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds