Wall clock time and date at job start Mon Mar 30 2020 01:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38221 * 120.42609 * 2 1 4 4 N 1.31852 * 120.76789 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.72363 * 359.69848 * 4 3 2 6 6 C 1.38183 * 120.76584 * 0.58907 * 5 4 3 7 7 C 1.50701 * 120.41723 * 179.70358 * 6 5 4 8 8 H 1.09001 * 109.46309 * 179.72581 * 7 6 5 9 9 C 1.52994 * 109.47234 * 59.72526 * 7 6 5 10 10 C 1.50699 * 109.46833 * 299.72202 * 7 6 5 11 11 H 1.08002 * 120.00516 * 359.97438 * 10 7 6 12 12 C 1.37884 * 119.99783 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99707 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 119.99956 * 180.27458 * 12 10 7 15 15 H 1.48503 * 109.47407 * 269.72718 * 14 12 10 16 16 H 1.48505 * 109.47281 * 29.72474 * 14 12 10 17 17 H 1.48501 * 109.47274 * 149.72572 * 14 12 10 18 18 C 1.38631 * 120.41531 * 180.02562 * 2 1 3 19 19 H 1.08999 * 109.47409 * 269.98326 * 1 2 3 20 20 H 1.09009 * 109.46580 * 29.97949 * 1 2 3 21 21 H 1.08994 * 109.47657 * 149.97562 * 1 2 3 22 22 H 1.08008 * 119.61478 * 0.03966 * 3 2 1 23 23 H 1.08003 * 119.61491 * 180.31747 * 5 4 3 24 24 H 1.08998 * 109.47717 * 59.99779 * 9 7 6 25 25 H 1.09001 * 109.47144 * 180.02562 * 9 7 6 26 26 H 1.09007 * 109.47093 * 299.99374 * 9 7 6 27 27 H 0.97005 * 119.99656 * 179.97438 * 13 12 10 28 28 H 1.07998 * 120.79077 * 359.95907 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.1919 0.0000 4 7 3.5255 1.1997 -0.0005 5 6 4.2256 0.0821 0.0049 6 6 3.5947 -1.1473 -0.0009 7 6 4.4026 -2.4195 -0.0014 8 1 3.7297 -3.2770 -0.0014 9 6 5.2852 -2.4637 1.2475 10 6 5.2711 -2.4624 -1.2322 11 1 5.2408 -1.6500 -1.9432 12 6 6.1037 -3.5395 -1.4512 13 7 6.1394 -4.5295 -0.5862 14 14 7.1860 -3.5892 -2.9728 15 1 6.4533 -4.2547 -4.0799 16 1 7.5384 -2.2038 -3.3751 17 1 8.4265 -4.3485 -2.6734 18 6 2.2088 -1.1955 -0.0005 19 1 -0.3634 -0.0003 1.0276 20 1 -0.3633 0.8903 -0.5136 21 1 -0.3634 -0.8897 -0.5142 22 1 1.6676 2.1276 0.0006 23 1 5.3046 0.1283 0.0095 24 1 4.6570 -2.4326 2.1377 25 1 5.8698 -3.3836 1.2469 26 1 5.9580 -1.6061 1.2474 27 1 6.7249 -5.2874 -0.7404 28 1 1.6886 -2.1420 -0.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259938453.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:20 Heat of formation + Delta-G solvation = 12.582780 kcal Electronic energy + Delta-G solvation = -11425.752632 eV Core-core repulsion = 9440.883302 eV Total energy + Delta-G solvation = -1984.869330 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.58639 -34.81302 -33.02272 -31.79685 -28.73190 -26.75697 -25.18531 -22.86843 -22.18849 -19.44382 -16.46792 -16.32629 -15.50023 -14.78112 -13.79008 -13.58174 -12.84624 -12.66494 -12.37421 -12.34139 -12.13609 -11.75130 -11.28473 -10.95401 -10.91368 -10.37262 -10.21079 -9.72495 -9.23735 -8.80503 -8.69573 -8.38004 -7.95362 -6.06564 -4.13974 1.80890 2.02751 3.27902 3.34790 3.39157 4.36608 4.53298 5.08934 5.22810 5.28200 5.34297 5.61088 5.75958 5.81103 6.00853 6.10274 6.32665 6.49863 6.78031 6.82329 6.91117 7.09406 7.17047 7.48274 7.63994 7.84993 8.02188 8.31196 8.66157 8.88490 9.51378 10.99103 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.051407 B = 0.010060 C = 0.009809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.547240 B = 2782.769973 C = 2853.807496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.146 4.146 3 C 0.061 3.939 4 N -0.490 5.490 5 C 0.094 3.906 6 C -0.074 4.074 7 C 0.075 3.925 8 H 0.036 0.964 9 C -0.133 4.133 10 C -0.511 4.511 11 H 0.057 0.943 12 C 0.064 3.936 13 N -0.889 5.889 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.273 1.273 17 H -0.286 1.286 18 C -0.094 4.094 19 H 0.065 0.935 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.141 0.859 23 H 0.154 0.846 24 H 0.009 0.991 25 H 0.087 0.913 26 H 0.030 0.970 27 H 0.262 0.738 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 5.495 1.519 9.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.148 4.148 3 C -0.096 4.096 4 N -0.198 5.198 5 C -0.063 4.063 6 C -0.076 4.076 7 C 0.056 3.944 8 H 0.054 0.946 9 C -0.190 4.190 10 C -0.549 4.549 11 H 0.075 0.925 12 C -0.138 4.138 13 N -0.527 5.527 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.198 1.198 17 H -0.211 1.211 18 C -0.119 4.119 19 H 0.084 0.916 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.158 0.842 23 H 0.171 0.829 24 H 0.028 0.972 25 H 0.106 0.894 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.587 6.134 1.550 9.133 hybrid contribution 0.151 -0.957 -0.866 1.299 sum -6.436 5.178 0.683 8.288 Atomic orbital electron populations 1.20641 0.91222 1.02391 1.01824 1.20804 0.96760 0.94564 1.02686 1.22331 0.90318 0.96667 1.00246 1.67598 1.08126 1.32033 1.12007 1.22640 1.00307 0.87107 0.96263 1.21665 0.93976 0.98912 0.93036 1.17856 0.93295 0.88119 0.95160 0.94590 1.21798 0.99337 1.02963 0.94951 1.21089 1.22852 1.05261 1.05718 0.92452 1.24952 0.96859 0.95415 0.96578 1.69883 1.38947 1.08691 1.35204 0.86552 0.79972 0.78232 0.83059 1.20668 1.19773 1.21129 1.21449 0.94154 0.97443 0.98896 0.91611 0.91851 0.91748 0.84187 0.82906 0.97240 0.89401 0.95100 0.92846 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.04 36.00 0.36 -0.90 15 2 C -0.15 -2.43 5.90 -104.48 -0.62 -3.05 15 3 C 0.06 1.06 10.86 -17.55 -0.19 0.87 15 4 N -0.49 -9.83 10.36 -13.25 -0.14 -9.97 15 5 C 0.09 1.99 9.91 -17.55 -0.17 1.82 15 6 C -0.07 -1.62 4.74 -104.48 -0.50 -2.11 15 7 C 0.07 1.84 2.49 -92.93 -0.23 1.61 15 8 H 0.04 0.94 7.93 -51.93 -0.41 0.53 15 9 C -0.13 -3.15 8.78 37.15 0.33 -2.83 15 10 C -0.51 -13.76 8.26 -34.44 -0.28 -14.05 15 11 H 0.06 1.56 7.62 -52.49 -0.40 1.16 15 12 C 0.06 1.72 5.30 -17.82 -0.09 1.63 15 13 N -0.89 -24.79 11.32 55.43 0.63 -24.16 15 14 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 15 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 16 H -0.27 -6.39 7.11 56.52 0.40 -5.98 15 17 H -0.29 -6.66 7.11 56.52 0.40 -6.25 15 18 C -0.09 -1.79 9.49 -39.28 -0.37 -2.16 15 19 H 0.07 0.72 8.14 -51.93 -0.42 0.29 15 20 H 0.06 0.66 8.09 -51.92 -0.42 0.24 15 21 H 0.06 0.74 8.09 -51.93 -0.42 0.32 15 22 H 0.14 1.95 8.06 -52.48 -0.42 1.53 15 23 H 0.15 3.24 7.58 -52.48 -0.40 2.85 15 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 15 25 H 0.09 2.28 6.07 -51.93 -0.32 1.96 15 26 H 0.03 0.69 7.40 -51.93 -0.38 0.31 15 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 28 H 0.13 2.21 8.00 -52.49 -0.42 1.79 15 LS Contribution 241.76 15.07 3.64 3.64 Total: -1.00 -28.44 241.76 -6.23 -34.67 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -3.57 Total: -1.04 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -1.77 Total: -19.17 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.49 Total: -34.13 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.44 -6.23 -34.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938453.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.253 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds