Wall clock time and date at job start Mon Mar 30 2020 01:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38221 * 120.42609 * 2 1 4 4 N 1.31852 * 120.76789 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.72363 * 359.69848 * 4 3 2 6 6 C 1.38183 * 120.76584 * 0.58907 * 5 4 3 7 7 C 1.50701 * 120.41723 * 179.70358 * 6 5 4 8 8 H 1.09001 * 109.46309 * 179.72581 * 7 6 5 9 9 C 1.52994 * 109.47234 * 59.72526 * 7 6 5 10 10 C 1.50699 * 109.46833 * 299.72202 * 7 6 5 11 11 H 1.08002 * 120.00516 * 359.97438 * 10 7 6 12 12 C 1.37884 * 119.99783 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99707 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 119.99956 * 180.27458 * 12 10 7 15 15 H 1.48503 * 109.47407 * 269.72718 * 14 12 10 16 16 H 1.48505 * 109.47281 * 29.72474 * 14 12 10 17 17 H 1.48501 * 109.47274 * 149.72572 * 14 12 10 18 18 C 1.38631 * 120.41531 * 180.02562 * 2 1 3 19 19 H 1.08999 * 109.47409 * 269.98326 * 1 2 3 20 20 H 1.09009 * 109.46580 * 29.97949 * 1 2 3 21 21 H 1.08994 * 109.47657 * 149.97562 * 1 2 3 22 22 H 1.08008 * 119.61478 * 0.03966 * 3 2 1 23 23 H 1.08003 * 119.61491 * 180.31747 * 5 4 3 24 24 H 1.08998 * 109.47717 * 59.99779 * 9 7 6 25 25 H 1.09001 * 109.47144 * 180.02562 * 9 7 6 26 26 H 1.09007 * 109.47093 * 299.99374 * 9 7 6 27 27 H 0.97005 * 119.99656 * 179.97438 * 13 12 10 28 28 H 1.07998 * 120.79077 * 359.95907 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.1919 0.0000 4 7 3.5255 1.1997 -0.0005 5 6 4.2256 0.0821 0.0049 6 6 3.5947 -1.1473 -0.0009 7 6 4.4026 -2.4195 -0.0014 8 1 3.7297 -3.2770 -0.0014 9 6 5.2852 -2.4637 1.2475 10 6 5.2711 -2.4624 -1.2322 11 1 5.2408 -1.6500 -1.9432 12 6 6.1037 -3.5395 -1.4512 13 7 6.1394 -4.5295 -0.5862 14 14 7.1860 -3.5892 -2.9728 15 1 6.4533 -4.2547 -4.0799 16 1 7.5384 -2.2038 -3.3751 17 1 8.4265 -4.3485 -2.6734 18 6 2.2088 -1.1955 -0.0005 19 1 -0.3634 -0.0003 1.0276 20 1 -0.3633 0.8903 -0.5136 21 1 -0.3634 -0.8897 -0.5142 22 1 1.6676 2.1276 0.0006 23 1 5.3046 0.1283 0.0095 24 1 4.6570 -2.4326 2.1377 25 1 5.8698 -3.3836 1.2469 26 1 5.9580 -1.6061 1.2474 27 1 6.7249 -5.2874 -0.7404 28 1 1.6886 -2.1420 -0.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259938453.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:20 Heat of formation + Delta-G solvation = -3.607936 kcal Electronic energy + Delta-G solvation = -11426.454714 eV Core-core repulsion = 9440.883302 eV Total energy + Delta-G solvation = -1985.571412 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.08522 -36.66619 -34.35963 -33.69944 -30.44722 -27.99984 -27.24636 -24.50767 -23.72370 -21.14387 -18.41912 -17.80170 -17.08783 -16.72093 -15.25017 -15.08555 -14.52091 -14.29819 -13.83751 -13.70973 -13.43450 -13.27659 -12.92464 -12.85075 -12.80071 -12.24400 -12.13039 -11.52576 -11.14339 -10.56680 -10.29720 -10.17823 -9.49159 -8.13111 -6.27356 0.34576 0.51005 1.40595 1.42325 1.52468 2.41513 3.00572 3.15583 3.68709 4.02070 4.11605 4.21078 4.31824 4.60016 4.73637 4.88659 4.91442 4.98252 5.08890 5.20387 5.27521 5.39168 5.48158 5.58019 5.89224 5.93952 6.05115 6.30020 6.79919 7.16136 7.41034 8.91518 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.051407 B = 0.010060 C = 0.009809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.547240 B = 2782.769973 C = 2853.807496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.132 4.132 3 C 0.062 3.938 4 N -0.504 5.504 5 C 0.076 3.924 6 C -0.099 4.099 7 C 0.077 3.923 8 H 0.011 0.989 9 C -0.123 4.123 10 C -0.526 4.526 11 H 0.048 0.952 12 C 0.018 3.982 13 N -0.914 5.914 14 Si 0.954 3.046 15 H -0.276 1.276 16 H -0.271 1.271 17 H -0.280 1.280 18 C -0.104 4.104 19 H 0.085 0.915 20 H 0.088 0.912 21 H 0.071 0.929 22 H 0.182 0.818 23 H 0.141 0.859 24 H 0.025 0.975 25 H 0.063 0.937 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.702 6.701 1.132 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.134 4.134 3 C -0.095 4.095 4 N -0.212 5.212 5 C -0.079 4.079 6 C -0.101 4.101 7 C 0.058 3.942 8 H 0.029 0.971 9 C -0.180 4.180 10 C -0.564 4.564 11 H 0.066 0.934 12 C -0.181 4.181 13 N -0.553 5.553 14 Si 0.780 3.220 15 H -0.202 1.202 16 H -0.196 1.196 17 H -0.205 1.205 18 C -0.130 4.130 19 H 0.103 0.897 20 H 0.107 0.893 21 H 0.090 0.910 22 H 0.198 0.802 23 H 0.158 0.842 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.155 7.340 1.165 11.033 hybrid contribution 0.518 -1.269 -0.718 1.547 sum -7.637 6.071 0.447 9.766 Atomic orbital electron populations 1.20749 0.87445 1.04057 1.03545 1.21259 0.99308 0.93075 0.99783 1.23075 0.89504 0.98687 0.98230 1.67611 1.09725 1.31286 1.12543 1.22422 1.00035 0.87513 0.97969 1.21417 0.95141 0.97660 0.95845 1.17686 0.92996 0.88908 0.94643 0.97064 1.21639 0.99222 1.01618 0.95554 1.21332 1.23512 1.05048 1.06509 0.93406 1.25677 0.98049 0.95122 0.99245 1.69995 1.39581 1.09110 1.36606 0.85611 0.78412 0.78186 0.79806 1.20151 1.19584 1.20535 1.21668 0.93252 0.99205 0.98858 0.89652 0.89327 0.91037 0.80156 0.84202 0.95627 0.91829 0.94938 0.92737 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 10.04 71.24 0.72 -1.28 15 2 C -0.13 -4.00 5.90 -19.78 -0.12 -4.11 15 3 C 0.06 1.97 10.86 84.69 0.92 2.89 15 4 N -0.50 -19.55 10.36 -195.84 -2.03 -21.58 15 5 C 0.08 3.28 9.91 84.67 0.84 4.12 15 6 C -0.10 -4.35 4.74 -19.77 -0.09 -4.45 15 7 C 0.08 3.89 2.49 -12.29 -0.03 3.86 15 8 H 0.01 0.61 7.93 -2.39 -0.02 0.59 15 9 C -0.12 -5.98 8.78 71.98 0.63 -5.34 15 10 C -0.53 -29.01 8.26 25.60 0.21 -28.80 15 11 H 0.05 2.66 7.62 -2.91 -0.02 2.64 15 12 C 0.02 1.00 5.30 84.66 0.45 1.45 15 13 N -0.91 -51.95 11.32 21.45 0.24 -51.71 15 14 Si 0.95 43.53 29.54 68.60 2.03 45.56 15 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 17 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 18 C -0.10 -3.87 9.49 22.47 0.21 -3.65 15 19 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 20 H 0.09 1.36 8.09 -2.38 -0.02 1.34 15 21 H 0.07 1.35 8.09 -2.39 -0.02 1.34 15 22 H 0.18 4.14 8.06 -2.91 -0.02 4.12 15 23 H 0.14 6.17 7.58 -2.91 -0.02 6.15 15 24 H 0.02 1.11 8.14 -2.39 -0.02 1.09 15 25 H 0.06 3.39 6.07 -2.39 -0.01 3.38 15 26 H 0.03 1.51 7.40 -2.38 -0.02 1.49 15 27 H 0.26 14.20 8.31 -92.70 -0.77 13.43 15 28 H 0.13 4.62 8.00 -2.91 -0.02 4.59 15 Total: -1.00 -61.38 241.76 5.11 -56.27 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.13 Total: 6.78 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 3.74 Total: -35.32 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -1.79 Total: -73.29 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -61.38 5.11 -56.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938453.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.665 kcal (2) G-P(sol) polarization free energy of solvation -61.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds