Wall clock time and date at job start Mon Mar 30 2020 01:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38123 * 119.96487 * 2 1 4 4 C 1.38890 * 119.92779 * 180.02562 * 3 2 1 5 5 N 1.39675 * 120.07425 * 179.97438 * 4 3 2 6 6 C 1.38929 * 119.84885 * 359.75270 * 4 3 2 7 7 C 1.38080 * 119.92509 * 0.50000 * 6 4 3 8 8 C 1.50706 * 119.96501 * 179.76993 * 7 6 4 9 9 C 1.50698 * 109.47294 * 269.73087 * 8 7 6 10 10 H 1.08005 * 119.99819 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00046 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99933 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99912 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47123 * 90.00333 * 13 11 9 15 15 H 1.48506 * 109.46940 * 210.00455 * 13 11 9 16 16 H 1.48497 * 109.47329 * 330.00167 * 13 11 9 17 17 C 1.38262 * 119.96527 * 180.02562 * 2 1 3 18 18 H 1.08996 * 109.46798 * 269.97894 * 1 2 3 19 19 H 1.08998 * 109.47082 * 29.97365 * 1 2 3 20 20 H 1.09003 * 109.46993 * 149.97851 * 1 2 3 21 21 H 1.07999 * 120.03792 * 0.02562 * 3 2 1 22 22 H 0.96999 * 120.00342 * 359.97438 * 5 4 3 23 23 H 0.97007 * 119.99796 * 180.02562 * 5 4 3 24 24 H 1.08002 * 120.03657 * 180.25359 * 6 4 3 25 25 H 1.09001 * 109.46953 * 29.72529 * 8 7 6 26 26 H 1.09000 * 109.47318 * 149.72127 * 8 7 6 27 27 H 0.97006 * 119.99727 * 179.97438 * 12 11 9 28 28 H 1.08010 * 119.92132 * 359.97438 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 3.5858 1.1957 -0.0005 5 7 4.2865 2.4040 -0.0011 6 6 4.2765 -0.0097 0.0041 7 6 3.5806 -1.2024 -0.0012 8 6 4.3290 -2.5105 -0.0014 9 6 4.5779 -2.9466 -1.4222 10 1 4.2287 -2.3377 -2.2430 11 6 5.2505 -4.1235 -1.6743 12 7 5.4673 -4.5044 -2.9142 13 14 5.8537 -5.1770 -0.2546 14 1 4.7982 -6.1510 0.1225 15 1 7.0784 -5.9090 -0.6668 16 1 6.1644 -4.3086 0.9092 17 6 2.1976 -1.1978 -0.0005 18 1 -0.3633 -0.0004 1.0276 19 1 -0.3633 0.8902 -0.5134 20 1 -0.3633 -0.8898 -0.5142 21 1 1.6569 2.1319 0.0004 22 1 3.8032 3.2450 -0.0015 23 1 5.2566 2.4021 -0.0018 24 1 5.3565 -0.0139 0.0079 25 1 5.2821 -2.3838 0.5120 26 1 3.7372 -3.2677 0.5129 27 1 5.9408 -5.3322 -3.0916 28 1 1.6557 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259985144.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:58 Heat of formation + Delta-G solvation = 5.589242 kcal Electronic energy + Delta-G solvation = -11204.406059 eV Core-core repulsion = 9219.233466 eV Total energy + Delta-G solvation = -1985.172592 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.89330 -34.55669 -33.53987 -31.87864 -29.12647 -27.26877 -26.29473 -22.93167 -20.82518 -19.70630 -16.71854 -16.39135 -15.82686 -15.20372 -14.18646 -13.95111 -13.39008 -12.98673 -12.55782 -12.20452 -11.99412 -11.93894 -11.41083 -11.18088 -10.73540 -10.39701 -10.26225 -9.84064 -9.54419 -9.25479 -8.54125 -7.77624 -6.95978 -6.03172 -4.01548 2.12847 2.33902 3.31663 3.38971 3.42575 4.25777 4.45307 4.56753 5.28399 5.38467 5.51332 5.71408 5.91031 5.99041 6.10155 6.20397 6.31240 6.47472 6.75749 6.91329 7.05655 7.09783 7.26024 7.52653 7.72728 7.76685 8.02556 8.13386 8.55314 9.03200 9.57327 11.09951 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.043461 B = 0.009997 C = 0.009070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.108043 B = 2800.087141 C = 3086.362107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.049 4.049 3 C -0.222 4.222 4 C 0.210 3.790 5 N -0.886 5.886 6 C -0.200 4.200 7 C 0.017 3.983 8 C 0.013 3.987 9 C -0.509 4.509 10 H 0.074 0.926 11 C 0.068 3.932 12 N -0.902 5.902 13 Si 0.878 3.122 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.265 1.265 17 C -0.175 4.175 18 H 0.063 0.937 19 H 0.058 0.942 20 H 0.064 0.936 21 H 0.107 0.893 22 H 0.391 0.609 23 H 0.394 0.606 24 H 0.114 0.886 25 H 0.027 0.973 26 H 0.024 0.976 27 H 0.263 0.737 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 10.155 7.266 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.049 4.049 3 C -0.245 4.245 4 C 0.107 3.893 5 N -0.426 5.426 6 C -0.223 4.223 7 C 0.016 3.984 8 C -0.024 4.024 9 C -0.547 4.547 10 H 0.092 0.908 11 C -0.133 4.133 12 N -0.540 5.540 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.189 1.189 17 C -0.194 4.194 18 H 0.082 0.918 19 H 0.077 0.923 20 H 0.083 0.917 21 H 0.125 0.875 22 H 0.218 0.782 23 H 0.222 0.778 24 H 0.133 0.867 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.101 9.955 7.153 13.277 hybrid contribution 0.626 -0.284 0.490 0.844 sum -4.476 9.670 7.642 13.113 Atomic orbital electron populations 1.20733 0.92144 1.02169 1.01543 1.19527 0.95026 0.92838 0.97556 1.20142 0.91826 0.97285 1.15202 1.17721 0.91209 0.86218 0.94120 1.42365 1.08546 1.04945 1.86740 1.20458 0.99296 0.90614 1.11891 1.19980 0.93296 0.95492 0.89638 1.18824 0.94951 0.90057 0.98556 1.20936 1.36440 1.06860 0.90492 0.90799 1.24998 0.95500 0.97330 0.95492 1.69907 1.42021 1.23410 1.18707 0.86803 0.78623 0.80812 0.83270 1.20146 1.21308 1.18947 1.20708 0.93914 0.96808 1.08012 0.91804 0.92286 0.91674 0.87492 0.78247 0.77847 0.86748 0.95525 0.95791 0.92671 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 36.01 0.36 -1.12 15 2 C -0.05 -0.86 5.88 -104.66 -0.62 -1.47 15 3 C -0.22 -3.72 9.55 -39.38 -0.38 -4.09 15 4 C 0.21 3.65 6.75 -83.79 -0.57 3.08 15 5 N -0.89 -11.61 9.09 32.41 0.29 -11.31 15 6 C -0.20 -4.05 9.55 -39.38 -0.38 -4.43 15 7 C 0.02 0.37 5.07 -104.65 -0.53 -0.16 15 8 C 0.01 0.33 4.17 -29.03 -0.12 0.21 15 9 C -0.51 -14.85 9.65 -34.44 -0.33 -15.19 15 10 H 0.07 2.37 7.98 -52.48 -0.42 1.95 15 11 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 12 N -0.90 -28.05 13.96 55.43 0.77 -27.28 15 13 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 15 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 15 H -0.29 -7.03 7.11 56.52 0.40 -6.62 15 16 H -0.26 -6.29 6.54 56.52 0.37 -5.92 15 17 C -0.17 -3.55 9.35 -39.55 -0.37 -3.92 15 18 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.06 0.70 8.08 -51.93 -0.42 0.28 15 20 H 0.06 0.86 8.08 -51.93 -0.42 0.44 15 21 H 0.11 1.51 8.06 -52.49 -0.42 1.08 15 22 H 0.39 4.09 8.84 -40.82 -0.36 3.73 15 23 H 0.39 4.59 8.84 -40.82 -0.36 4.23 15 24 H 0.11 2.25 8.06 -52.49 -0.42 1.82 15 25 H 0.03 0.65 7.14 -51.93 -0.37 0.28 15 26 H 0.02 0.58 7.51 -51.93 -0.39 0.19 15 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 28 H 0.11 2.26 8.06 -52.48 -0.42 1.83 15 LS Contribution 243.83 15.07 3.67 3.67 Total: -1.00 -31.84 243.83 -6.55 -38.39 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.60 Total: 4.66 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -3.02 Total: -25.18 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 1.07 Total: -38.59 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.84 -6.55 -38.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259985144.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.975 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds