Wall clock time and date at job start Mon Mar 30 2020 01:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38123 * 119.96487 * 2 1 4 4 C 1.38890 * 119.92779 * 180.02562 * 3 2 1 5 5 N 1.39675 * 120.07425 * 179.97438 * 4 3 2 6 6 C 1.38929 * 119.84885 * 359.75270 * 4 3 2 7 7 C 1.38080 * 119.92509 * 0.50000 * 6 4 3 8 8 C 1.50706 * 119.96501 * 179.76993 * 7 6 4 9 9 C 1.50698 * 109.47294 * 269.73087 * 8 7 6 10 10 H 1.08005 * 119.99819 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00046 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99933 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99912 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47123 * 90.00333 * 13 11 9 15 15 H 1.48506 * 109.46940 * 210.00455 * 13 11 9 16 16 H 1.48497 * 109.47329 * 330.00167 * 13 11 9 17 17 C 1.38262 * 119.96527 * 180.02562 * 2 1 3 18 18 H 1.08996 * 109.46798 * 269.97894 * 1 2 3 19 19 H 1.08998 * 109.47082 * 29.97365 * 1 2 3 20 20 H 1.09003 * 109.46993 * 149.97851 * 1 2 3 21 21 H 1.07999 * 120.03792 * 0.02562 * 3 2 1 22 22 H 0.96999 * 120.00342 * 359.97438 * 5 4 3 23 23 H 0.97007 * 119.99796 * 180.02562 * 5 4 3 24 24 H 1.08002 * 120.03657 * 180.25359 * 6 4 3 25 25 H 1.09001 * 109.46953 * 29.72529 * 8 7 6 26 26 H 1.09000 * 109.47318 * 149.72127 * 8 7 6 27 27 H 0.97006 * 119.99727 * 179.97438 * 12 11 9 28 28 H 1.08010 * 119.92132 * 359.97438 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 3.5858 1.1957 -0.0005 5 7 4.2865 2.4040 -0.0011 6 6 4.2765 -0.0097 0.0041 7 6 3.5806 -1.2024 -0.0012 8 6 4.3290 -2.5105 -0.0014 9 6 4.5779 -2.9466 -1.4222 10 1 4.2287 -2.3377 -2.2430 11 6 5.2505 -4.1235 -1.6743 12 7 5.4673 -4.5044 -2.9142 13 14 5.8537 -5.1770 -0.2546 14 1 4.7982 -6.1510 0.1225 15 1 7.0784 -5.9090 -0.6668 16 1 6.1644 -4.3086 0.9092 17 6 2.1976 -1.1978 -0.0005 18 1 -0.3633 -0.0004 1.0276 19 1 -0.3633 0.8902 -0.5134 20 1 -0.3633 -0.8898 -0.5142 21 1 1.6569 2.1319 0.0004 22 1 3.8032 3.2450 -0.0015 23 1 5.2566 2.4021 -0.0018 24 1 5.3565 -0.0139 0.0079 25 1 5.2821 -2.3838 0.5120 26 1 3.7372 -3.2677 0.5129 27 1 5.9408 -5.3322 -3.0916 28 1 1.6557 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259985144.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:58 Heat of formation + Delta-G solvation = -15.747174 kcal Electronic energy + Delta-G solvation = -11205.331275 eV Core-core repulsion = 9219.233466 eV Total energy + Delta-G solvation = -1986.097809 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.32134 -36.03605 -35.24374 -33.77470 -30.67711 -28.93877 -27.58712 -24.89913 -22.20839 -21.30758 -18.97039 -17.64467 -17.25293 -16.62710 -16.20772 -15.33615 -14.91247 -14.60144 -14.15680 -13.80438 -13.55841 -13.31961 -12.95178 -12.82233 -12.40478 -12.07635 -12.04043 -11.69905 -11.39598 -10.92487 -10.79099 -9.29523 -8.30972 -8.28024 -6.35377 0.67313 0.86527 1.36001 1.37810 1.50316 2.35363 3.03149 3.06709 3.13607 4.08398 4.15847 4.42533 4.64283 4.68207 4.80478 4.92185 4.94132 5.04350 5.12304 5.32389 5.36549 5.50640 5.60038 5.84595 6.09693 6.15925 6.29065 6.68350 6.73792 7.12420 7.27787 8.86501 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.043461 B = 0.009997 C = 0.009070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.108043 B = 2800.087141 C = 3086.362107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.045 4.045 3 C -0.221 4.221 4 C 0.217 3.783 5 N -0.868 5.868 6 C -0.226 4.226 7 C -0.016 4.016 8 C 0.021 3.979 9 C -0.519 4.519 10 H 0.025 0.975 11 C 0.007 3.993 12 N -0.950 5.950 13 Si 0.953 3.047 14 H -0.263 1.263 15 H -0.280 1.280 16 H -0.248 1.248 17 C -0.202 4.202 18 H 0.084 0.916 19 H 0.081 0.919 20 H 0.063 0.937 21 H 0.144 0.856 22 H 0.408 0.592 23 H 0.402 0.598 24 H 0.109 0.891 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.268 0.732 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.916 11.516 8.990 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.046 4.046 3 C -0.243 4.243 4 C 0.112 3.888 5 N -0.409 5.409 6 C -0.249 4.249 7 C -0.017 4.017 8 C -0.017 4.017 9 C -0.557 4.557 10 H 0.043 0.957 11 C -0.190 4.190 12 N -0.590 5.590 13 Si 0.776 3.224 14 H -0.188 1.188 15 H -0.206 1.206 16 H -0.171 1.171 17 C -0.222 4.222 18 H 0.103 0.897 19 H 0.100 0.900 20 H 0.082 0.918 21 H 0.161 0.839 22 H 0.238 0.762 23 H 0.231 0.769 24 H 0.128 0.872 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.862 11.370 8.884 15.574 hybrid contribution 0.814 -0.555 -0.126 0.993 sum -5.049 10.814 8.758 14.803 Atomic orbital electron populations 1.20804 0.89109 1.03258 1.03197 1.19960 0.97266 0.91961 0.95379 1.20573 0.91639 0.98493 1.13638 1.17787 0.91855 0.86572 0.92627 1.42304 1.09145 1.04308 1.85143 1.20486 0.99263 0.91425 1.13699 1.19902 0.94310 0.94970 0.92538 1.18661 0.95505 0.91936 0.95569 1.21135 1.36346 1.06598 0.91650 0.95672 1.26001 0.95505 0.98803 0.98655 1.70063 1.43225 1.24339 1.21389 0.85616 0.78341 0.78864 0.79616 1.18818 1.20564 1.17120 1.20789 0.93379 0.98074 1.09998 0.89712 0.90016 0.91813 0.83863 0.76235 0.76879 0.87250 0.95346 0.95324 0.92301 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 10.01 71.24 0.71 -1.86 15 2 C -0.04 -1.49 5.88 -19.89 -0.12 -1.61 15 3 C -0.22 -6.74 9.55 22.40 0.21 -6.53 15 4 C 0.22 7.13 6.75 38.21 0.26 7.39 15 5 N -0.87 -20.30 9.09 -51.37 -0.47 -20.76 15 6 C -0.23 -9.19 9.55 22.40 0.21 -8.98 15 7 C -0.02 -0.75 5.07 -19.88 -0.10 -0.85 15 8 C 0.02 1.04 4.17 29.10 0.12 1.16 15 9 C -0.52 -31.57 9.65 25.60 0.25 -31.33 15 10 H 0.02 1.71 7.98 -2.91 -0.02 1.69 15 11 C 0.01 0.43 5.47 84.65 0.46 0.89 15 12 N -0.95 -60.96 13.96 21.45 0.30 -60.67 15 13 Si 0.95 45.12 27.47 68.60 1.88 47.00 15 14 H -0.26 -11.89 7.11 99.48 0.71 -11.19 15 15 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 16 H -0.25 -10.95 6.54 99.48 0.65 -10.30 15 17 C -0.20 -8.30 9.35 22.29 0.21 -8.09 15 18 H 0.08 1.72 8.14 -2.39 -0.02 1.70 15 19 H 0.08 1.61 8.08 -2.39 -0.02 1.59 15 20 H 0.06 1.55 8.08 -2.39 -0.02 1.53 15 21 H 0.14 3.31 8.06 -2.91 -0.02 3.29 15 22 H 0.41 6.99 8.84 -92.71 -0.82 6.17 15 23 H 0.40 8.43 8.84 -92.70 -0.82 7.61 15 24 H 0.11 4.38 8.06 -2.91 -0.02 4.36 15 25 H 0.03 1.40 7.14 -2.39 -0.02 1.38 15 26 H 0.03 1.40 7.51 -2.39 -0.02 1.38 15 27 H 0.27 15.92 8.31 -92.70 -0.77 15.14 15 28 H 0.11 4.38 8.06 -2.91 -0.02 4.36 15 Total: -1.00 -71.07 243.83 3.41 -67.66 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.53 Total: 16.56 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 2.22 Total: -49.80 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -0.17 Total: -81.43 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -71.07 3.41 -67.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259985144.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.914 kcal (2) G-P(sol) polarization free energy of solvation -71.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds