Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99812 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00015 * 3 2 1 5 5 H 1.48502 * 109.47234 * 29.99507 * 3 2 1 6 6 H 1.48495 * 109.47459 * 149.99517 * 3 2 1 7 7 C 1.37866 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00512 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46947 * 179.97438 * 9 7 2 11 11 C 1.34675 * 125.84157 * 125.00198 * 10 9 7 12 12 N 1.37214 * 106.91103 * 180.02562 * 11 10 9 13 13 C 1.38775 * 145.44690 * 179.97438 * 12 11 10 14 14 C 1.32667 * 107.71935 * 180.02562 * 13 12 11 15 15 O 1.35242 * 108.81299 * 359.96495 * 14 13 12 16 16 C 1.35047 * 108.72694 * 0.05434 * 15 14 13 17 17 N 1.31488 * 144.36685 * 179.97438 * 16 15 14 18 18 H 0.97007 * 120.00246 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47086 * 60.00288 * 9 7 2 20 20 H 1.08998 * 109.47229 * 300.00117 * 9 7 2 21 21 H 1.07999 * 126.54492 * 359.75885 * 11 10 9 22 22 H 1.08002 * 126.13695 * 0.02562 * 13 12 11 23 23 H 1.07998 * 125.59354 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.2670 -4.6508 0.8948 12 7 3.3049 -5.4710 0.5305 13 6 4.0110 -6.6257 0.8370 14 6 4.9685 -6.7664 -0.0704 15 8 4.8942 -5.7382 -0.9458 16 6 3.8720 -4.9333 -0.5836 17 7 3.2155 -3.8361 -0.8900 18 1 -0.4851 0.8401 -0.0004 19 1 0.6248 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 1.6081 -4.7842 1.7401 22 1 3.8159 -7.2905 1.6656 23 1 5.6885 -7.5706 -0.1050 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259992364.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = 94.210765 kcal Electronic energy + Delta-G solvation = -11201.353557 eV Core-core repulsion = 9018.764876 eV Total energy + Delta-G solvation = -2182.588680 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.52373 -39.44812 -34.19709 -32.92699 -30.13699 -29.29562 -26.95286 -23.50947 -21.91208 -21.58824 -19.82739 -17.10014 -16.84822 -16.21031 -15.75054 -15.10669 -14.37536 -13.37929 -13.32227 -12.89925 -12.33568 -12.01402 -11.50233 -10.99846 -10.66090 -10.58433 -9.84389 -9.39982 -9.16968 -8.36706 -8.15473 -7.60861 -5.94284 -3.94337 1.58401 2.35474 2.63272 3.00263 3.40532 3.45517 3.50427 3.73332 4.55004 4.61358 4.77803 5.28227 5.33032 5.42477 5.87537 6.12973 6.43999 6.58766 7.39438 7.41475 7.63896 7.76819 8.03769 8.39437 8.61444 9.09549 9.67916 11.16807 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.076463 B = 0.008828 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.103348 B = 3171.044525 C = 3378.422445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.090 3.910 10 C 0.112 3.888 11 C -0.099 4.099 12 N -0.442 5.442 13 C -0.035 4.035 14 C -0.027 4.027 15 O -0.177 6.177 16 C 0.320 3.680 17 N -0.447 5.447 18 H 0.261 0.739 19 H 0.041 0.959 20 H 0.040 0.960 21 H 0.178 0.822 22 H 0.188 0.812 23 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.885 -13.344 2.906 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.052 3.948 10 C -0.016 4.016 11 C -0.224 4.224 12 N -0.130 5.130 13 C -0.152 4.152 14 C -0.095 4.095 15 O -0.072 6.072 16 C 0.028 3.972 17 N -0.183 5.183 18 H 0.070 0.930 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.195 0.805 22 H 0.205 0.795 23 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 7.013 -12.787 2.202 14.749 hybrid contribution 0.357 0.125 0.879 0.957 sum 7.371 -12.662 3.081 14.971 Atomic orbital electron populations 1.69948 1.05949 1.26705 1.51356 1.24974 0.94886 0.99212 0.95457 0.86502 0.79710 0.83100 0.78163 1.20587 1.21330 1.19964 1.21054 0.93360 0.89675 1.49812 0.92160 1.17836 0.90765 0.87511 0.98642 1.21980 0.94566 0.96019 0.89012 1.22009 0.97190 0.95479 1.07680 1.44482 1.25378 1.18874 1.24291 1.22136 0.96399 0.92220 1.04405 1.23878 1.02141 0.93227 0.90267 1.84585 1.43235 1.31822 1.47552 1.22753 0.91583 0.94424 0.88477 1.70551 1.08872 1.09688 1.29158 0.92960 0.94083 0.94141 0.80529 0.79481 0.75811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.28 14 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 14 3 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 14 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 14 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 14 6 H -0.27 -6.80 7.11 56.52 0.40 -6.40 14 7 C -0.50 -14.72 9.07 -34.44 -0.31 -15.03 14 8 H 0.06 1.81 7.74 -52.48 -0.41 1.41 14 9 C 0.09 2.42 5.54 -29.03 -0.16 2.26 14 10 C 0.11 2.68 6.29 -82.83 -0.52 2.16 14 11 C -0.10 -1.96 11.92 -16.40 -0.20 -2.16 14 12 N -0.44 -8.01 3.57 -64.78 -0.23 -8.24 14 13 C -0.03 -0.42 11.95 -16.30 -0.19 -0.62 14 14 C -0.03 -0.30 12.01 28.84 0.35 0.05 14 15 O -0.18 -2.96 10.77 0.96 0.01 -2.95 14 16 C 0.32 6.65 9.78 -88.59 -0.87 5.79 14 17 N -0.45 -11.02 11.26 -10.88 -0.12 -11.14 14 18 H 0.26 7.39 8.31 -40.82 -0.34 7.05 14 19 H 0.04 1.16 8.14 -51.93 -0.42 0.74 14 20 H 0.04 1.07 8.11 -51.93 -0.42 0.65 14 21 H 0.18 2.94 8.06 -52.49 -0.42 2.51 14 22 H 0.19 1.45 8.06 -52.49 -0.42 1.02 14 23 H 0.23 1.08 8.06 -52.49 -0.42 0.66 14 LS Contribution 218.23 15.07 3.29 3.29 Total: -1.00 -34.47 218.23 -4.99 -39.46 By element: Atomic # 1 Polarization: -3.84 SS G_CDS: -1.65 Total: -5.50 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.00 Total: -6.05 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.38 Total: -45.65 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: 0.01 Total: -2.95 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -34.47 -4.99 -39.46 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992364.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.675 kcal (2) G-P(sol) polarization free energy of solvation -34.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds