Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99812 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00015 * 3 2 1 5 5 H 1.48502 * 109.47234 * 29.99507 * 3 2 1 6 6 H 1.48495 * 109.47459 * 149.99517 * 3 2 1 7 7 C 1.37866 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00512 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46947 * 179.97438 * 9 7 2 11 11 C 1.34675 * 125.84157 * 125.00198 * 10 9 7 12 12 N 1.37214 * 106.91103 * 180.02562 * 11 10 9 13 13 C 1.38775 * 145.44690 * 179.97438 * 12 11 10 14 14 C 1.32667 * 107.71935 * 180.02562 * 13 12 11 15 15 O 1.35242 * 108.81299 * 359.96495 * 14 13 12 16 16 C 1.35047 * 108.72694 * 0.05434 * 15 14 13 17 17 N 1.31488 * 144.36685 * 179.97438 * 16 15 14 18 18 H 0.97007 * 120.00246 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47086 * 60.00288 * 9 7 2 20 20 H 1.08998 * 109.47229 * 300.00117 * 9 7 2 21 21 H 1.07999 * 126.54492 * 359.75885 * 11 10 9 22 22 H 1.08002 * 126.13695 * 0.02562 * 13 12 11 23 23 H 1.07998 * 125.59354 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.2670 -4.6508 0.8948 12 7 3.3049 -5.4710 0.5305 13 6 4.0110 -6.6257 0.8370 14 6 4.9685 -6.7664 -0.0704 15 8 4.8942 -5.7382 -0.9458 16 6 3.8720 -4.9333 -0.5836 17 7 3.2155 -3.8361 -0.8900 18 1 -0.4851 0.8401 -0.0004 19 1 0.6248 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 1.6081 -4.7842 1.7401 22 1 3.8159 -7.2905 1.6656 23 1 5.6885 -7.5706 -0.1050 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259992364.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = 68.562166 kcal Electronic energy + Delta-G solvation = -11202.465763 eV Core-core repulsion = 9018.764876 eV Total energy + Delta-G solvation = -2183.700887 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.87202 -40.88882 -35.75873 -34.89653 -31.97281 -30.65568 -28.70385 -25.46037 -23.17129 -23.00894 -21.50298 -18.64308 -18.27053 -18.03465 -17.16903 -16.68156 -16.03734 -14.90642 -14.46063 -14.42626 -14.14015 -13.89583 -13.52827 -12.76267 -12.62178 -12.33196 -11.88432 -11.49655 -10.94506 -10.56305 -9.47687 -9.21285 -8.16987 -6.25924 0.47667 1.04962 1.29534 1.40667 1.43315 1.53998 1.79589 2.03056 2.46311 3.15084 3.43884 3.77413 4.11071 4.31122 4.62509 4.81098 4.89409 5.14807 5.34097 5.48625 5.77014 5.80356 6.22294 6.38939 6.81792 6.99038 7.40384 8.93711 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.076463 B = 0.008828 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.103348 B = 3171.044525 C = 3378.422445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.522 4.522 8 H 0.044 0.956 9 C 0.100 3.900 10 C 0.063 3.937 11 C -0.073 4.073 12 N -0.437 5.437 13 C -0.053 4.053 14 C -0.001 4.001 15 O -0.188 6.188 16 C 0.301 3.699 17 N -0.506 5.506 18 H 0.266 0.734 19 H 0.009 0.991 20 H 0.036 0.964 21 H 0.210 0.790 22 H 0.237 0.763 23 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.517 -15.094 4.080 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.063 0.937 9 C 0.063 3.937 10 C -0.064 4.064 11 C -0.201 4.201 12 N -0.125 5.125 13 C -0.167 4.167 14 C -0.066 4.066 15 O -0.083 6.083 16 C 0.007 3.993 17 N -0.242 5.242 18 H 0.075 0.925 19 H 0.027 0.973 20 H 0.054 0.946 21 H 0.226 0.774 22 H 0.254 0.746 23 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges 8.673 -14.581 3.378 17.299 hybrid contribution -0.045 0.467 0.509 0.692 sum 8.628 -14.115 3.886 16.993 Atomic orbital electron populations 1.70046 1.07276 1.27915 1.51634 1.25827 0.95851 1.02765 0.94766 0.85457 0.78503 0.78715 0.78381 1.20107 1.19759 1.19616 1.21276 0.92827 0.91492 1.50438 0.93732 1.17475 0.91045 0.88441 0.96782 1.21473 0.95795 0.97386 0.91734 1.22201 0.97039 0.94076 1.06741 1.44633 1.24531 1.20084 1.23274 1.23138 0.96003 0.91006 1.06586 1.25352 1.01879 0.91794 0.87531 1.84632 1.41882 1.32692 1.49132 1.22600 0.92681 0.94476 0.89523 1.70184 1.10375 1.12707 1.30966 0.92484 0.97322 0.94579 0.77352 0.74637 0.69394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.44 0.28 -56.72 14 2 C 0.01 0.34 5.46 84.65 0.46 0.81 14 3 Si 0.96 46.67 29.54 68.60 2.03 48.70 14 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 14 5 H -0.27 -12.46 7.11 99.48 0.71 -11.75 14 6 H -0.27 -12.88 7.11 99.48 0.71 -12.17 14 7 C -0.52 -31.99 9.07 25.60 0.23 -31.76 14 8 H 0.04 2.80 7.74 -2.91 -0.02 2.78 14 9 C 0.10 5.68 5.54 29.10 0.16 5.84 14 10 C 0.06 3.16 6.29 41.39 0.26 3.42 14 11 C -0.07 -2.88 11.92 83.03 0.99 -1.89 14 12 N -0.44 -14.98 3.57 -470.04 -1.68 -16.65 14 13 C -0.05 -1.06 11.95 82.43 0.99 -0.07 14 14 C 0.00 -0.01 12.01 66.65 0.80 0.79 14 15 O -0.19 -5.89 10.77 -19.48 -0.21 -6.10 14 16 C 0.30 12.42 9.78 179.64 1.76 14.18 14 17 N -0.51 -25.90 11.26 -301.92 -3.40 -29.30 14 18 H 0.27 15.25 8.31 -92.70 -0.77 14.48 14 19 H 0.01 0.53 8.14 -2.39 -0.02 0.51 14 20 H 0.04 2.00 8.11 -2.39 -0.02 1.98 14 21 H 0.21 6.55 8.06 -2.91 -0.02 6.52 14 22 H 0.24 2.16 8.06 -2.91 -0.02 2.13 14 23 H 0.29 0.65 8.06 -2.91 -0.02 0.63 14 Total: -1.00 -79.89 218.23 3.89 -76.00 By element: Atomic # 1 Polarization: -8.46 SS G_CDS: 1.22 Total: -7.24 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 5.65 Total: -8.69 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -4.79 Total: -102.67 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.21 Total: -6.10 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -79.89 3.89 -76.00 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992364.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.564 kcal (2) G-P(sol) polarization free energy of solvation -79.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds