Wall clock time and date at job start Mon Mar 30 2020 02:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28416 * 124.39626 * 2 1 4 4 C 1.32983 * 111.01269 * 180.02562 * 3 2 1 5 5 C 1.41182 * 126.80064 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99895 * 179.97438 * 5 4 3 7 7 C 1.39845 * 120.00015 * 359.97022 * 5 4 3 8 8 N 1.30914 * 119.99731 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00098 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47156 * 60.00145 * 9 7 5 11 11 H 1.48507 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47164 * 300.00194 * 9 7 5 13 13 C 1.46493 * 106.40088 * 359.97438 * 4 3 2 14 14 O 1.34317 * 147.61181 * 179.97438 * 13 4 3 15 15 C 1.34525 * 109.66574 * 180.02562 * 14 13 4 16 16 C 1.34392 * 109.24744 * 359.97438 * 15 14 13 17 17 C 1.37020 * 124.40127 * 180.02562 * 2 1 3 18 18 H 1.08998 * 109.47045 * 269.96314 * 1 2 3 19 19 H 1.09001 * 109.47027 * 29.96873 * 1 2 3 20 20 H 1.08996 * 109.46695 * 149.96684 * 1 2 3 21 21 H 0.97003 * 119.99499 * 179.97438 * 8 7 5 22 22 H 1.07994 * 125.37270 * 179.73303 * 15 14 13 23 23 H 1.08001 * 126.42061 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1904 1.0596 0.0000 4 6 3.4841 0.7518 -0.0006 5 6 4.5686 1.6558 -0.0002 6 1 5.5823 1.2831 -0.0003 7 6 4.3302 3.0338 0.0002 8 7 3.1014 3.4855 0.0007 9 14 5.7650 4.2299 -0.0001 10 1 6.5929 4.0095 -1.2129 11 1 5.2486 5.6224 0.0010 12 1 6.5939 4.0089 1.2120 13 6 3.5612 -0.7111 -0.0003 14 8 4.3394 -1.8059 -0.0008 15 6 3.5692 -2.9088 -0.0004 16 6 2.2753 -2.5455 0.0009 17 6 2.2391 -1.1306 -0.0005 18 1 -0.3633 -0.0007 1.0276 19 1 -0.3633 0.8903 -0.5134 20 1 -0.3632 -0.8897 -0.5143 21 1 2.9361 4.4413 0.0014 22 1 3.9332 -3.9255 -0.0048 23 1 1.4231 -3.2089 0.0010 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260022923.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:35 Heat of formation + Delta-G solvation = 93.656425 kcal Electronic energy + Delta-G solvation = -11521.239035 eV Core-core repulsion = 9338.626317 eV Total energy + Delta-G solvation = -2182.612718 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.76153 -38.85079 -33.61447 -31.44237 -31.11620 -27.57232 -27.24134 -23.97220 -21.47588 -19.92559 -19.51881 -17.21608 -15.88471 -15.35662 -15.03631 -14.55029 -13.90368 -13.64868 -12.84469 -12.14240 -12.05779 -11.53985 -11.47808 -11.03026 -10.70196 -10.46030 -9.90117 -9.49877 -8.80086 -8.74916 -7.18123 -7.10601 -6.36928 -4.17209 2.55146 3.17690 3.22925 3.26473 3.54297 3.68380 4.12430 4.24388 4.25681 5.34516 5.52731 5.59841 5.82991 5.92856 6.07655 6.26148 6.44696 6.84278 7.12699 7.28052 7.46957 8.02910 8.35995 8.59200 8.86653 9.14092 10.18847 10.60920 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.049054 B = 0.013175 C = 0.010444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.658671 B = 2124.720976 C = 2680.236215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.338 5.338 3 N -0.299 5.299 4 C 0.245 3.755 5 C -0.441 4.441 6 H 0.084 0.916 7 C 0.071 3.929 8 N -0.776 5.776 9 Si 0.912 3.088 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.268 1.268 13 C -0.113 4.113 14 O -0.164 6.164 15 C -0.033 4.033 16 C -0.204 4.204 17 C -0.046 4.046 18 H 0.053 0.947 19 H 0.079 0.921 20 H 0.064 0.936 21 H 0.272 0.728 22 H 0.194 0.806 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 -6.226 -0.099 6.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.129 5.129 3 N -0.129 5.129 4 C 0.092 3.908 5 C -0.481 4.481 6 H 0.102 0.898 7 C -0.148 4.148 8 N -0.405 5.405 9 Si 0.737 3.263 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.193 1.193 13 C -0.172 4.172 14 O -0.059 6.059 15 C -0.103 4.103 16 C -0.227 4.227 17 C -0.164 4.164 18 H 0.071 0.929 19 H 0.097 0.903 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.211 0.789 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.896 -5.177 -0.100 5.933 hybrid contribution 0.747 -0.376 0.019 0.836 sum -2.149 -5.553 -0.081 5.955 Atomic orbital electron populations 1.21436 0.76819 1.02551 1.01451 1.44119 1.05096 1.00452 1.63283 1.74695 1.00629 1.06136 1.31441 1.19510 0.90803 0.81416 0.99098 1.18512 0.91839 0.89478 1.48235 0.89763 1.25728 0.96454 0.98784 0.93791 1.69962 1.20005 1.14726 1.35792 0.86315 0.81555 0.78807 0.79575 1.19244 1.20622 1.19251 1.22541 0.86991 0.90462 1.17183 1.83679 1.35218 1.12518 1.74522 1.23773 0.88819 0.90643 1.07033 1.20245 0.97242 0.91133 1.14060 1.19836 0.92889 0.90810 1.12885 0.92869 0.90253 0.91678 0.91747 0.78907 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.23 11.29 59.85 0.68 2.90 14 2 N -0.34 -8.51 3.74 -65.43 -0.24 -8.75 14 3 N -0.30 -8.68 10.18 33.26 0.34 -8.35 14 4 C 0.24 7.27 6.93 -82.93 -0.57 6.70 14 5 C -0.44 -12.77 9.43 -37.86 -0.36 -13.12 14 6 H 0.08 2.31 7.84 -52.48 -0.41 1.90 14 7 C 0.07 1.95 5.49 -17.34 -0.10 1.85 14 8 N -0.78 -22.03 11.98 55.54 0.67 -21.36 14 9 Si 0.91 20.01 29.56 -169.99 -5.02 14.99 14 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 14 11 H -0.28 -5.99 7.11 56.52 0.40 -5.58 14 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 14 13 C -0.11 -3.07 8.54 -36.08 -0.31 -3.38 14 14 O -0.16 -3.90 10.65 5.07 0.05 -3.84 14 15 C -0.03 -0.61 12.03 29.37 0.35 -0.26 14 16 C -0.20 -3.99 10.89 -39.68 -0.43 -4.43 14 17 C -0.05 -1.13 7.68 -84.11 -0.65 -1.77 14 18 H 0.05 0.89 8.14 -51.93 -0.42 0.47 14 19 H 0.08 1.42 8.14 -51.93 -0.42 0.99 14 20 H 0.06 1.00 8.13 -51.93 -0.42 0.58 14 21 H 0.27 7.04 8.30 -40.82 -0.34 6.71 14 22 H 0.19 2.43 8.06 -52.49 -0.42 2.01 14 23 H 0.14 2.11 8.06 -52.49 -0.42 1.69 14 LS Contribution 216.37 15.07 3.26 3.26 Total: -1.00 -33.52 216.37 -3.99 -37.51 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -1.66 Total: -1.96 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -1.38 Total: -11.51 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.76 Total: -38.45 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: 0.05 Total: -3.84 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -33.52 -3.99 -37.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022923.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.171 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds