Wall clock time and date at job start Mon Mar 30 2020 01:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99526 * 2 1 4 4 H 1.48503 * 109.47102 * 269.99741 * 3 2 1 5 5 H 1.48497 * 109.47375 * 30.00492 * 3 2 1 6 6 H 1.48503 * 109.46860 * 150.00685 * 3 2 1 7 7 C 1.37871 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00078 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.30147 * 299.28860 * 9 7 2 11 11 C 1.53821 * 110.34038 * 61.44999 * 9 7 2 12 12 C 1.51010 * 104.71917 * 118.92142 * 11 9 7 13 13 O 1.21439 * 125.58299 * 180.02562 * 12 11 9 14 14 C 1.41583 * 108.69495 * 0.10210 * 12 11 9 15 15 O 1.35823 * 140.79159 * 179.97438 * 14 12 11 16 16 C 1.33692 * 109.51164 * 179.90273 * 15 14 12 17 17 C 1.35255 * 109.05742 * 359.97438 * 16 15 14 18 18 C 1.37437 * 111.89155 * 359.89206 * 14 12 11 19 19 H 0.97003 * 120.00120 * 359.97438 * 1 2 3 20 20 H 1.09002 * 110.40972 * 237.76708 * 11 9 7 21 21 H 1.09002 * 110.40559 * 0.08227 * 11 9 7 22 22 H 1.08005 * 125.46684 * 179.97438 * 16 15 14 23 23 H 1.07995 * 126.47179 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6293 -2.5768 0.8913 11 6 0.3864 -2.6173 -1.2671 12 6 0.9136 -3.8403 -1.9789 13 8 0.4959 -4.2807 -3.0308 14 6 1.9730 -4.3880 -1.2159 15 8 2.8593 -5.4171 -1.2324 16 6 3.6358 -5.3551 -0.1459 17 6 3.2707 -4.2857 0.5974 18 6 2.2109 -3.6615 -0.0738 19 1 -0.4850 0.8401 0.0004 20 1 -0.6615 -2.7548 -1.0005 21 1 0.5056 -1.7326 -1.8926 22 1 4.4274 -6.0478 0.0990 23 1 3.7123 -3.9725 1.5318 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260316093.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:42 Heat of formation + Delta-G solvation = -32.180389 kcal Electronic energy + Delta-G solvation = -11513.433451 eV Core-core repulsion = 9293.071288 eV Total energy + Delta-G solvation = -2220.362163 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.057 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.66426 -40.19722 -37.34744 -34.36242 -32.65042 -29.62705 -28.22008 -25.26551 -23.09777 -21.36526 -20.65025 -18.66596 -17.81996 -17.20536 -16.77082 -16.26610 -15.67442 -15.60329 -14.49818 -14.08162 -13.81072 -13.63585 -13.07660 -12.78949 -12.54966 -12.43073 -11.83530 -11.46888 -11.00438 -10.51995 -10.44836 -9.53270 -8.19852 -6.32915 -0.23263 1.42666 1.45165 1.47344 1.56199 1.65758 1.92487 2.43661 3.10708 3.54672 3.84063 3.99705 4.13530 4.53492 4.61488 4.63968 5.01039 5.15601 5.27844 5.40410 5.55458 5.72087 5.95310 6.13053 6.53374 6.73429 7.36230 8.88192 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.044678 B = 0.013240 C = 0.011114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.554039 B = 2114.331127 C = 2518.662771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.959 3.041 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.091 3.909 10 H 0.044 0.956 11 C -0.116 4.116 12 C 0.438 3.562 13 O -0.510 6.510 14 C -0.211 4.211 15 O -0.166 6.166 16 C 0.040 3.960 17 C -0.233 4.233 18 C -0.060 4.060 19 H 0.268 0.732 20 H 0.097 0.903 21 H 0.096 0.904 22 H 0.271 0.729 23 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 -5.839 2.885 9.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.073 3.927 10 H 0.062 0.938 11 C -0.154 4.154 12 C 0.324 3.676 13 O -0.392 6.392 14 C -0.259 4.259 15 O -0.062 6.062 16 C -0.030 4.030 17 C -0.252 4.252 18 C -0.062 4.062 19 H 0.077 0.923 20 H 0.115 0.885 21 H 0.114 0.886 22 H 0.287 0.713 23 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.062 -6.131 2.122 8.879 hybrid contribution 0.186 1.037 0.096 1.058 sum 6.247 -5.094 2.218 8.360 Atomic orbital electron populations 1.70028 1.07061 1.28104 1.49690 1.25694 0.95724 1.02300 0.94127 0.85527 0.78836 0.78993 0.78193 1.20444 1.20633 1.19027 1.21148 0.93163 0.89983 1.52517 0.92254 1.17793 0.90847 0.90166 0.93904 0.93837 1.22230 1.00966 0.93685 0.98535 1.21228 0.78786 0.84584 0.83028 1.90474 1.61176 1.64640 1.22932 1.22515 1.03197 0.95281 1.04933 1.84013 1.38141 1.42562 1.41504 1.25686 0.95011 0.99123 0.83143 1.21569 1.00140 0.98621 1.04868 1.22708 0.95229 0.95094 0.93151 0.92323 0.88469 0.88629 0.71343 0.80487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.01 12.35 21.45 0.26 -48.74 14 2 C 0.02 1.15 5.09 84.65 0.43 1.58 14 3 Si 0.96 41.12 29.54 68.60 2.03 43.14 14 4 H -0.28 -11.88 7.11 99.48 0.71 -11.17 14 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 14 6 H -0.27 -11.02 7.11 99.48 0.71 -10.32 14 7 C -0.53 -27.49 8.44 25.60 0.22 -27.27 14 8 H 0.06 3.05 7.76 -2.91 -0.02 3.03 14 9 C 0.09 4.41 2.94 -11.94 -0.04 4.37 14 10 H 0.04 2.21 8.14 -2.38 -0.02 2.19 14 11 C -0.12 -5.53 5.67 30.22 0.17 -5.36 14 12 C 0.44 20.60 7.51 26.61 0.20 20.80 14 13 O -0.51 -25.64 18.04 -3.52 -0.06 -25.70 14 14 C -0.21 -9.18 7.93 22.91 0.18 -9.00 14 15 O -0.17 -6.09 10.69 -12.57 -0.13 -6.22 14 16 C 0.04 1.04 12.06 67.13 0.81 1.85 14 17 C -0.23 -7.45 10.88 22.04 0.24 -7.21 14 18 C -0.06 -2.52 6.35 -19.53 -0.12 -2.64 14 19 H 0.27 13.70 8.31 -92.71 -0.77 12.93 14 20 H 0.10 4.45 8.14 -2.39 -0.02 4.43 14 21 H 0.10 4.91 7.23 -2.39 -0.02 4.89 14 22 H 0.27 3.18 8.06 -2.91 -0.02 3.16 14 23 H 0.18 4.65 8.06 -2.91 -0.02 4.63 14 Total: -1.00 -63.13 214.50 5.41 -57.72 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 1.22 Total: 2.67 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 2.09 Total: -22.87 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.26 Total: -48.74 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.20 Total: -31.92 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -63.13 5.41 -57.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260316093.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.544 kcal (2) G-P(sol) polarization free energy of solvation -63.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds