Wall clock time and date at job start Mon Mar 30 2020 01:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47347 * 2 1 4 4 C 1.50700 * 109.46930 * 119.99817 * 2 1 3 5 5 C 1.37751 * 120.57317 * 300.27683 * 4 2 1 6 6 N 1.32003 * 121.01242 * 180.28650 * 5 4 2 7 7 C 1.32044 * 122.32015 * 359.71615 * 6 5 4 8 8 C 1.37708 * 121.00993 * 359.97438 * 7 6 5 9 9 C 1.41039 * 120.57119 * 120.00109 * 4 2 1 10 10 C 1.41496 * 121.02879 * 359.97438 * 9 4 2 11 11 H 1.08001 * 120.00322 * 25.60124 * 10 9 4 12 12 C 1.40055 * 119.99894 * 205.58988 * 10 9 4 13 13 N 1.30732 * 120.00032 * 201.76689 * 12 10 9 14 14 Si 1.86801 * 119.99833 * 21.77746 * 12 10 9 15 15 H 1.48505 * 109.46863 * 262.94972 * 14 12 10 16 16 H 1.48498 * 109.47468 * 22.95047 * 14 12 10 17 17 H 1.48504 * 109.47011 * 142.95287 * 14 12 10 18 18 H 1.08997 * 109.47439 * 300.00516 * 1 2 3 19 19 H 1.09001 * 109.46664 * 60.00435 * 1 2 3 20 20 H 1.08998 * 109.47371 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47439 * 239.99484 * 2 1 3 22 22 H 1.08997 * 109.47249 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.46883 * 299.99431 * 3 2 1 24 24 H 1.08997 * 109.47272 * 59.99382 * 3 2 1 25 25 H 1.07997 * 119.49084 * 359.97438 * 5 4 2 26 26 H 1.08000 * 119.49681 * 180.02562 * 7 6 5 27 27 H 1.07995 * 120.56533 * 180.02562 * 8 7 6 28 28 H 0.96996 * 119.99960 * 352.85320 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.7020 -0.2533 2.4873 6 7 2.1418 -0.8655 3.5709 7 6 2.9080 -1.9393 3.5133 8 6 3.2874 -2.4760 2.3032 9 6 2.8438 -1.8581 1.1152 10 6 3.2058 -2.3710 -0.1529 11 1 3.2374 -1.7163 -1.0113 12 6 3.5235 -3.7276 -0.2949 13 7 4.2477 -4.1269 -1.3074 14 14 2.9120 -4.9665 0.9623 15 1 3.9814 -5.2296 1.9586 16 1 1.7154 -4.4219 1.6527 17 1 2.5533 -6.2332 0.2751 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6768 1.9563 -0.8901 24 1 1.6766 1.9564 0.8899 25 1 1.0778 0.6224 2.5875 26 1 3.2417 -2.4042 4.4292 27 1 3.9140 -3.3547 2.2645 28 1 4.4779 -3.5042 -2.0145 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260573336.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:37 Heat of formation + Delta-G solvation = -1.249405 kcal Electronic energy + Delta-G solvation = -11751.750964 eV Core-core repulsion = 9766.281825 eV Total energy + Delta-G solvation = -1985.469138 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.82692 -34.87587 -34.07344 -31.04236 -28.89541 -26.55831 -25.50581 -22.97477 -21.07981 -19.25209 -18.40555 -15.65160 -15.20093 -14.41030 -13.96207 -13.27250 -13.17111 -12.91474 -12.72808 -12.08001 -11.85880 -11.64583 -11.38532 -10.95362 -10.56979 -10.46329 -10.27709 -9.89751 -9.44282 -9.24995 -8.30472 -7.96206 -7.71393 -7.38905 -4.74293 2.47903 2.70853 3.15876 3.32682 3.49215 3.93927 4.56663 5.33126 5.50968 5.62820 5.73153 5.92273 6.09901 6.11854 6.25940 6.33537 6.47288 6.51665 6.65321 6.70843 6.87236 6.88731 7.14801 7.28608 7.42817 7.60214 7.86604 8.26594 8.39119 8.63250 9.42000 9.88145 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.034126 B = 0.016930 C = 0.013046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.295147 B = 1653.432851 C = 2145.756755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.038 4.038 3 C -0.137 4.137 4 C -0.225 4.225 5 C 0.113 3.887 6 N -0.579 5.579 7 C 0.111 3.889 8 C -0.292 4.292 9 C 0.117 3.883 10 C -0.505 4.505 11 H 0.083 0.917 12 C 0.046 3.954 13 N -0.805 5.805 14 Si 1.073 2.927 15 H -0.276 1.276 16 H -0.263 1.263 17 H -0.289 1.289 18 H 0.047 0.953 19 H 0.043 0.957 20 H 0.052 0.948 21 H 0.079 0.921 22 H 0.049 0.951 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.108 0.892 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 3.181 1.224 4.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.057 4.057 3 C -0.195 4.195 4 C -0.229 4.229 5 C -0.039 4.039 6 N -0.294 5.294 7 C -0.042 4.042 8 C -0.314 4.314 9 C 0.109 3.891 10 C -0.536 4.536 11 H 0.101 0.899 12 C -0.175 4.175 13 N -0.428 5.428 14 Si 0.899 3.101 15 H -0.202 1.202 16 H -0.187 1.187 17 H -0.216 1.216 18 H 0.066 0.934 19 H 0.062 0.938 20 H 0.071 0.929 21 H 0.097 0.903 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.138 0.862 26 H 0.141 0.859 27 H 0.125 0.875 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.750 1.947 2.383 4.851 hybrid contribution 0.377 1.285 -1.442 1.968 sum -3.373 3.232 0.941 4.765 Atomic orbital electron populations 1.21809 0.96078 1.01281 1.00191 1.19743 0.94225 0.94376 0.97328 1.21831 1.00865 0.96515 1.00272 1.20526 1.05739 1.02196 0.94446 1.21806 0.96737 0.97141 0.88253 1.67456 1.17500 1.12100 1.32335 1.21948 0.93862 0.92352 0.96036 1.21868 1.09985 1.05762 0.93817 1.17819 0.87558 0.90535 0.93152 1.20657 1.41420 0.96145 0.95339 0.89905 1.27319 0.90282 0.99209 1.00693 1.70493 1.21087 1.42116 1.09080 0.83568 0.78378 0.74032 0.74107 1.20226 1.18747 1.21637 0.93370 0.93769 0.92913 0.90281 0.93200 0.93743 0.93316 0.86158 0.85855 0.87477 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.01 37.16 0.33 -1.99 15 2 C -0.04 -0.74 2.98 -91.77 -0.27 -1.02 15 3 C -0.14 -2.34 9.01 37.16 0.33 -2.01 15 4 C -0.22 -5.16 4.85 -103.74 -0.50 -5.66 15 5 C 0.11 2.52 9.90 -17.66 -0.17 2.35 15 6 N -0.58 -13.61 10.34 -13.42 -0.14 -13.75 15 7 C 0.11 2.55 11.16 -17.65 -0.20 2.35 15 8 C -0.29 -7.12 7.37 -38.70 -0.29 -7.40 15 9 C 0.12 2.97 5.19 -106.52 -0.55 2.42 15 10 C -0.51 -13.15 8.76 -37.66 -0.33 -13.48 15 11 H 0.08 2.19 6.54 -52.49 -0.34 1.85 15 12 C 0.05 1.19 5.40 -17.34 -0.09 1.10 15 13 N -0.81 -21.02 13.65 55.55 0.76 -20.26 15 14 Si 1.07 24.03 24.93 -169.99 -4.24 19.79 15 15 H -0.28 -5.88 6.71 56.52 0.38 -5.50 15 16 H -0.26 -5.97 6.87 56.52 0.39 -5.59 15 17 H -0.29 -6.25 7.11 56.52 0.40 -5.85 15 18 H 0.05 0.77 7.40 -51.93 -0.38 0.39 15 19 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.05 0.95 8.14 -51.93 -0.42 0.52 15 21 H 0.08 1.69 5.82 -51.93 -0.30 1.38 15 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.05 0.78 7.43 -51.93 -0.39 0.39 15 25 H 0.12 2.37 7.13 -52.49 -0.37 1.99 15 26 H 0.12 2.43 8.06 -52.49 -0.42 2.00 15 27 H 0.11 2.54 4.63 -52.49 -0.24 2.30 15 28 H 0.29 7.28 8.73 -40.82 -0.36 6.92 15 LS Contribution 231.53 15.07 3.49 3.49 Total: -1.00 -27.12 231.53 -5.20 -32.32 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.33 Total: 1.74 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -1.74 Total: -23.35 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.62 Total: -34.00 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -4.24 Total: 19.79 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -27.12 -5.20 -32.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573336.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.075 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds