Wall clock time and date at job start Mon Mar 30 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38667 * 120.78570 * 2 1 4 4 C 1.38187 * 119.16132 * 180.02562 * 3 2 1 5 5 N 1.31882 * 120.76498 * 359.97438 * 4 3 2 6 6 C 1.31857 * 121.72559 * 359.77323 * 5 4 3 7 7 C 1.38231 * 120.76102 * 0.49020 * 6 5 4 8 8 C 1.50699 * 120.41712 * 179.77576 * 7 6 5 9 9 H 1.09002 * 109.46959 * 179.72205 * 8 7 6 10 10 C 1.52997 * 109.47078 * 299.72116 * 8 7 6 11 11 C 1.50701 * 109.47269 * 59.72290 * 8 7 6 12 12 H 1.07999 * 119.99742 * 359.97438 * 11 8 7 13 13 C 1.37875 * 120.00221 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99615 * 359.97438 * 13 11 8 15 15 Si 1.86792 * 119.99983 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.47285 * 89.99870 * 15 13 11 17 17 H 1.48503 * 109.47250 * 209.99665 * 15 13 11 18 18 H 1.48499 * 109.47267 * 329.99827 * 15 13 11 19 19 H 1.09003 * 109.47230 * 269.98111 * 1 2 3 20 20 H 1.08997 * 109.47250 * 29.98669 * 1 2 3 21 21 H 1.09003 * 109.46895 * 149.98283 * 1 2 3 22 22 H 1.07999 * 120.42284 * 359.97438 * 3 2 1 23 23 H 1.08000 * 119.61528 * 179.97438 * 4 3 2 24 24 H 1.08000 * 119.62063 * 180.24780 * 6 5 4 25 25 H 1.08996 * 109.47853 * 300.00179 * 10 8 7 26 26 H 1.09002 * 109.47153 * 60.00207 * 10 8 7 27 27 H 1.08998 * 109.47533 * 179.97438 * 10 8 7 28 28 H 0.96997 * 119.99545 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0005 6 6 3.5983 -1.1516 0.0044 7 6 2.2166 -1.1908 -0.0004 8 6 1.4909 -2.5116 0.0003 9 1 0.4152 -2.3351 0.0011 10 6 1.8764 -3.3059 -1.2492 11 6 1.8724 -3.2939 1.2305 12 1 2.5709 -2.8766 1.9406 13 6 1.3306 -4.5428 1.4489 14 7 0.4803 -5.0511 0.5838 15 14 1.8041 -5.5127 2.9734 16 1 0.8675 -5.1862 4.0786 17 1 1.7330 -6.9661 2.6774 18 1 3.1884 -5.1568 3.3764 19 1 -0.3634 -0.0003 1.0277 20 1 -0.3633 0.8901 -0.5136 21 1 -0.3633 -0.8899 -0.5141 22 1 1.6966 2.1378 -0.0004 23 1 4.1582 2.0755 -0.0010 24 1 4.1585 -2.0749 0.0083 25 1 1.6005 -2.7402 -2.1391 26 1 2.9520 -3.4824 -1.2500 27 1 1.3519 -4.2614 -1.2486 28 1 0.0989 -5.9295 0.7377 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260576250.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:10 Heat of formation + Delta-G solvation = 0.016245 kcal Electronic energy + Delta-G solvation = -11619.708827 eV Core-core repulsion = 9634.294571 eV Total energy + Delta-G solvation = -1985.414256 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.10183 -36.67510 -34.60913 -33.20395 -30.29164 -28.44204 -27.22309 -24.87723 -22.89514 -21.46260 -18.48369 -17.34272 -17.06891 -16.69961 -15.52144 -15.11635 -14.60446 -14.41502 -13.87043 -13.62769 -13.39477 -13.32403 -12.91864 -12.83019 -12.61756 -12.23042 -12.10158 -11.41182 -11.07537 -10.55125 -10.15868 -10.09810 -9.57714 -8.11434 -6.24446 0.40195 0.52061 1.40133 1.42264 1.51871 2.42242 3.03828 3.17638 3.72543 4.00609 4.08152 4.30401 4.39018 4.73555 4.75055 4.80267 4.90139 4.95732 5.15631 5.20539 5.27131 5.31937 5.53157 5.62506 5.95213 5.98452 6.08465 6.33806 6.82780 7.20318 7.43236 8.93031 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.045181 B = 0.011781 C = 0.010991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.574576 B = 2376.175539 C = 2546.813951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.069 4.069 3 C -0.167 4.167 4 C 0.067 3.933 5 N -0.515 5.515 6 C 0.084 3.916 7 C -0.110 4.110 8 C 0.073 3.927 9 H 0.029 0.971 10 C -0.124 4.124 11 C -0.523 4.523 12 H 0.045 0.955 13 C 0.019 3.981 14 N -0.913 5.913 15 Si 0.950 3.050 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.273 1.273 19 H 0.073 0.927 20 H 0.095 0.905 21 H 0.059 0.941 22 H 0.166 0.834 23 H 0.184 0.816 24 H 0.138 0.862 25 H 0.023 0.977 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 9.645 -1.147 9.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 C -0.186 4.186 4 C -0.090 4.090 5 N -0.224 5.224 6 C -0.071 4.071 7 C -0.112 4.112 8 C 0.055 3.945 9 H 0.047 0.953 10 C -0.182 4.182 11 C -0.561 4.561 12 H 0.063 0.937 13 C -0.180 4.180 14 N -0.552 5.552 15 Si 0.776 3.224 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.198 1.198 19 H 0.092 0.908 20 H 0.113 0.887 21 H 0.078 0.922 22 H 0.184 0.816 23 H 0.200 0.800 24 H 0.155 0.845 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.359 9.478 -1.185 9.648 hybrid contribution -0.672 -1.009 0.761 1.432 sum 0.687 8.469 -0.424 8.507 Atomic orbital electron populations 1.20811 0.89490 1.03382 1.02916 1.20620 0.97933 0.92657 0.96501 1.22281 0.95465 0.98829 1.02032 1.23182 0.92585 0.96319 0.96903 1.67619 1.42127 0.99117 1.13556 1.22442 0.91974 0.95645 0.97055 1.21345 0.95368 0.97240 0.97218 1.17765 0.94848 0.87797 0.94138 0.95307 1.21655 0.99189 1.01511 0.95817 1.21324 1.26326 1.01833 1.06584 0.93709 1.25625 0.94944 0.98329 0.99078 1.69985 1.30758 1.17961 1.36530 0.85673 0.78649 0.77961 0.80105 1.20143 1.20600 1.19784 0.90839 0.88666 0.92196 0.81615 0.79952 0.84468 0.95776 0.95320 0.91828 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.42 9.46 71.24 0.67 -2.74 15 2 C -0.07 -2.50 5.92 -19.67 -0.12 -2.62 15 3 C -0.17 -4.89 9.82 22.36 0.22 -4.67 15 4 C 0.07 2.07 11.18 84.67 0.95 3.01 15 5 N -0.51 -19.96 10.36 -195.84 -2.03 -21.98 15 6 C 0.08 3.63 9.90 84.69 0.84 4.47 15 7 C -0.11 -4.79 4.74 -19.77 -0.09 -4.88 15 8 C 0.07 3.65 2.31 -12.29 -0.03 3.62 15 9 H 0.03 1.51 5.61 -2.39 -0.01 1.50 15 10 C -0.12 -6.02 8.79 71.98 0.63 -5.39 15 11 C -0.52 -28.58 8.25 25.60 0.21 -28.37 15 12 H 0.04 2.49 7.60 -2.91 -0.02 2.47 15 13 C 0.02 1.05 5.30 84.65 0.45 1.50 15 14 N -0.91 -51.46 11.32 21.45 0.24 -51.22 15 15 Si 0.95 43.45 29.54 68.60 2.03 45.47 15 16 H -0.28 -12.31 7.11 99.48 0.71 -11.61 15 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 19 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 20 H 0.09 2.21 8.10 -2.39 -0.02 2.19 15 21 H 0.06 2.11 6.21 -2.39 -0.01 2.09 15 22 H 0.17 3.38 8.06 -2.91 -0.02 3.35 15 23 H 0.18 4.03 8.06 -2.91 -0.02 4.01 15 24 H 0.14 6.11 7.60 -2.91 -0.02 6.09 15 25 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 26 H 0.03 1.33 7.43 -2.39 -0.02 1.32 15 27 H 0.06 3.38 6.07 -2.39 -0.01 3.36 15 28 H 0.26 14.09 8.31 -92.71 -0.77 13.32 15 Total: -1.00 -61.03 237.55 5.11 -55.92 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.14 Total: 7.89 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 3.73 Total: -36.07 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -1.79 Total: -73.20 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -61.03 5.11 -55.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260576250.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.934 kcal (2) G-P(sol) polarization free energy of solvation -61.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds