Wall clock time and date at job start Mon Mar 30 2020 01:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86806 * 119.99946 * 2 1 4 4 H 1.48499 * 109.46953 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47101 * 120.00114 * 3 2 1 6 6 H 1.48504 * 109.47038 * 240.00312 * 3 2 1 7 7 C 1.40144 * 120.00246 * 179.72373 * 2 1 3 8 8 H 1.08001 * 119.99643 * 3.31682 * 7 2 1 9 9 C 1.39902 * 120.00041 * 183.31358 * 7 2 1 10 10 C 1.38918 * 125.83699 * 186.04567 * 9 7 2 11 11 C 1.41816 * 106.27983 * 179.90972 * 10 9 7 12 12 C 1.38061 * 106.69884 * 0.34750 * 11 10 9 13 13 O 1.34184 * 108.69021 * 359.77957 * 12 11 10 14 14 C 1.51145 * 109.59742 * 179.76418 * 12 11 10 15 15 C 1.53553 * 106.16196 * 359.97438 * 14 12 11 16 16 C 1.46711 * 142.11417 * 179.97438 * 11 10 9 17 17 O 1.21301 * 126.02631 * 0.35363 * 16 11 10 18 18 H 0.96996 * 119.99686 * 174.79879 * 1 2 3 19 19 H 1.08003 * 126.86222 * 0.02562 * 10 9 7 20 20 H 1.08991 * 110.11518 * 119.17478 * 14 12 11 21 21 H 1.09005 * 110.10754 * 240.82699 * 14 12 11 22 22 H 1.08991 * 110.31612 * 241.09059 * 15 14 12 23 23 H 1.09002 * 110.39583 * 118.94995 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 1.2770 2.7465 0.0006 5 1 3.0957 1.6964 1.2124 6 1 3.0957 1.6965 -1.2126 7 6 2.0088 -1.2136 0.0059 8 1 1.4701 -2.1484 -0.0438 9 6 3.4060 -1.2143 0.0759 10 6 4.2251 -2.3314 -0.0288 11 6 5.5570 -1.8609 0.0973 12 6 5.4796 -0.4945 0.2786 13 8 4.1881 -0.1310 0.2624 14 6 6.8711 0.0768 0.4270 15 6 7.8357 -1.1127 0.3156 16 6 6.9508 -2.3189 0.1065 17 8 7.3263 -3.4644 -0.0291 18 1 -0.4849 -0.8366 -0.0762 19 1 3.9106 -3.3537 -0.1784 20 1 7.0680 0.7954 -0.3684 21 1 6.9777 0.5556 1.4005 22 1 8.4117 -1.2202 1.2346 23 1 8.5035 -0.9817 -0.5358 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260646139.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:45 Heat of formation + Delta-G solvation = -38.754713 kcal Electronic energy + Delta-G solvation = -11439.667539 eV Core-core repulsion = 9219.020292 eV Total energy + Delta-G solvation = -2220.647247 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.057 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.23199 -38.47562 -34.97394 -33.77436 -31.05721 -28.75248 -25.64152 -24.24294 -20.87221 -19.65671 -19.32803 -17.58732 -15.84475 -15.74453 -14.79427 -14.37205 -14.20448 -13.32722 -12.99835 -12.96616 -12.68133 -12.00917 -11.59658 -11.25112 -10.96154 -10.75805 -10.08512 -9.77356 -9.55707 -9.08208 -8.65275 -7.65553 -7.44721 -4.69532 1.85817 2.89194 3.01297 3.31803 3.42831 3.87228 3.97035 4.00847 4.74443 4.96383 5.01766 5.28554 5.47652 5.82799 6.00755 6.08035 6.15196 6.49998 6.97259 7.10673 7.32618 7.48232 7.81174 8.03730 8.19802 8.30343 8.66588 9.84470 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.062634 B = 0.012787 C = 0.010726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.936731 B = 2189.228735 C = 2609.871098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.042 3.958 3 Si 1.072 2.928 4 H -0.280 1.280 5 H -0.262 1.262 6 H -0.270 1.270 7 C -0.491 4.491 8 H 0.103 0.897 9 C 0.184 3.816 10 C -0.331 4.331 11 C -0.227 4.227 12 C -0.113 4.113 13 O -0.179 6.179 14 C -0.009 4.009 15 C -0.162 4.162 16 C 0.423 3.577 17 O -0.473 6.473 18 H 0.288 0.712 19 H 0.123 0.877 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.104 0.896 23 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.777 3.974 0.708 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.179 4.179 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.188 1.188 6 H -0.195 1.195 7 C -0.520 4.520 8 H 0.121 0.879 9 C 0.134 3.866 10 C -0.352 4.352 11 C -0.229 4.229 12 C -0.163 4.163 13 O -0.080 6.080 14 C -0.046 4.046 15 C -0.200 4.200 16 C 0.305 3.695 17 O -0.352 6.352 18 H 0.100 0.900 19 H 0.141 0.859 20 H 0.098 0.902 21 H 0.099 0.901 22 H 0.123 0.877 23 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.590 5.257 0.740 10.098 hybrid contribution -0.113 -1.979 -0.093 1.984 sum 8.477 3.278 0.647 9.112 Atomic orbital electron populations 1.70557 1.07632 1.33103 1.31679 1.27358 0.95944 1.04651 0.89954 0.83394 0.74349 0.72675 0.79853 1.20676 1.18794 1.19536 1.19861 0.87213 0.97251 1.47662 0.87887 1.19794 0.90910 0.81840 0.94022 1.20898 0.89131 0.98192 1.26948 1.21388 0.94986 0.95712 1.10855 1.22667 0.85133 0.94296 1.14166 1.83566 1.14529 1.36048 1.73864 1.20072 0.84880 0.96783 1.02830 1.22335 0.98705 0.94415 1.04550 1.21790 0.88976 0.88368 0.70412 1.90459 1.82205 1.22478 1.40053 0.90027 0.85912 0.90174 0.90135 0.87735 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.15 13.65 55.56 0.76 -20.40 14 2 C 0.04 1.08 5.52 -17.28 -0.10 0.99 14 3 Si 1.07 24.03 25.93 -169.99 -4.41 19.63 14 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 14 5 H -0.26 -5.76 6.80 56.52 0.38 -5.37 14 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 14 7 C -0.49 -13.25 9.75 -38.24 -0.37 -13.62 14 8 H 0.10 2.80 8.06 -52.49 -0.42 2.38 14 9 C 0.18 4.89 6.48 -38.71 -0.25 4.64 14 10 C -0.33 -8.60 11.00 -37.96 -0.42 -9.02 14 11 C -0.23 -5.33 6.92 -105.17 -0.73 -6.06 14 12 C -0.11 -2.49 8.34 -34.16 -0.28 -2.77 14 13 O -0.18 -4.48 5.97 4.37 0.03 -4.45 14 14 C -0.01 -0.13 6.82 -27.38 -0.19 -0.32 14 15 C -0.16 -2.29 6.89 -27.42 -0.19 -2.48 14 16 C 0.42 8.55 7.76 -30.72 -0.24 8.31 14 17 O -0.47 -10.67 18.03 5.54 0.10 -10.57 14 18 H 0.29 7.28 8.73 -40.82 -0.36 6.93 14 19 H 0.12 3.11 8.06 -52.48 -0.42 2.69 14 20 H 0.08 1.03 8.14 -51.93 -0.42 0.61 14 21 H 0.08 1.04 8.14 -51.93 -0.42 0.62 14 22 H 0.10 1.20 8.14 -51.93 -0.42 0.78 14 23 H 0.10 1.20 8.14 -51.93 -0.42 0.78 14 LS Contribution 211.48 15.07 3.19 3.19 Total: -1.00 -29.85 211.48 -4.80 -34.65 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -1.71 Total: -1.72 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -2.76 Total: -20.33 kcal Atomic # 7 Polarization: -21.15 SS G_CDS: 0.76 Total: -20.40 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.13 Total: -15.02 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -4.41 Total: 19.63 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -29.85 -4.80 -34.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646139.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.105 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds