Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39219 * 126.49994 * 221.18265 * 3 2 1 5 5 N 1.38184 * 126.44426 * 359.95007 * 4 3 2 6 6 N 1.34934 * 107.11707 * 179.97438 * 4 3 2 7 7 H 0.97003 * 125.76585 * 179.74265 * 6 4 3 8 8 N 1.39901 * 108.47711 * 0.02562 * 6 4 3 9 9 C 1.30349 * 109.20074 * 0.02562 * 8 6 4 10 10 C 1.50707 * 125.89459 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46916 * 270.00106 * 10 9 8 12 12 H 1.07998 * 120.00199 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00153 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99796 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00356 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47229 * 60.00198 * 15 13 11 17 17 H 1.48505 * 109.47136 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47131 * 300.00195 * 15 13 11 19 19 H 0.96999 * 120.00575 * 180.02562 * 5 4 3 20 20 H 0.97001 * 119.99593 * 0.02562 * 5 4 3 21 21 H 1.08999 * 109.47153 * 29.99608 * 10 9 8 22 22 H 1.08997 * 109.47113 * 150.00454 * 10 9 8 23 23 H 0.97002 * 120.00152 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3957 0.8433 0.7369 5 7 2.9899 1.8380 1.6060 6 7 4.6687 0.5064 0.4425 7 1 5.4645 0.9262 0.8049 8 7 4.6470 -0.5462 -0.4788 9 6 3.4096 -0.8539 -0.7492 10 6 2.9544 -1.9345 -1.6960 11 6 2.8034 -1.3584 -3.0803 12 1 3.0155 -0.3143 -3.2568 13 6 2.3947 -2.1644 -4.1216 14 7 2.1360 -3.4358 -3.9066 15 14 2.2069 -1.4503 -5.8374 16 1 3.5122 -0.9090 -6.2939 17 1 1.7584 -2.5151 -6.7704 18 1 1.2001 -0.3590 -5.8119 19 1 3.6505 2.3729 2.0734 20 1 2.0445 2.0013 1.7488 21 1 3.6928 -2.7360 -1.7145 22 1 1.9959 -2.3310 -1.3610 23 1 1.8480 -4.0028 -4.6390 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260781711.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = 90.314980 kcal Electronic energy + Delta-G solvation = -11062.212155 eV Core-core repulsion = 8911.747292 eV Total energy + Delta-G solvation = -2150.464863 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.071 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.75232 -35.62007 -34.90457 -33.19764 -31.36960 -28.60028 -27.69444 -23.42883 -22.13992 -19.60302 -18.36795 -17.15949 -16.29485 -15.69783 -14.71150 -14.61774 -14.37140 -12.49438 -12.44368 -12.33221 -12.19634 -11.73443 -11.41324 -10.98439 -10.69450 -10.66917 -9.99666 -9.70890 -9.49125 -8.42690 -8.35967 -7.50364 -5.99302 -4.01724 2.14962 2.78298 3.02083 3.39081 3.42284 3.46370 3.47310 3.91968 4.31555 4.52560 4.87134 5.35724 5.52153 5.72560 6.14152 6.68560 7.19028 7.25474 7.54267 7.58519 7.76094 7.96229 8.31086 8.36259 8.47097 9.00045 9.60978 11.11634 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.044030 B = 0.010764 C = 0.009873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.774929 B = 2600.755451 C = 2835.221557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.313 3.687 3 C -0.260 4.260 4 C 0.410 3.590 5 N -0.847 5.847 6 N -0.502 5.502 7 H 0.434 0.566 8 N -0.310 5.310 9 C 0.201 3.799 10 C 0.082 3.918 11 C -0.508 4.508 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 H 0.402 0.598 20 H 0.417 0.583 21 H 0.044 0.956 22 H 0.042 0.958 23 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 9.395 10.008 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C 0.000 4.000 3 C -0.280 4.280 4 C 0.174 3.826 5 N -0.395 5.395 6 N -0.213 5.213 7 H 0.277 0.723 8 N -0.130 5.130 9 C 0.030 3.970 10 C 0.043 3.957 11 C -0.548 4.548 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 H 0.231 0.769 20 H 0.249 0.751 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.107 8.880 9.631 13.728 hybrid contribution -0.132 1.161 -0.332 1.215 sum 3.975 10.041 9.298 14.251 Atomic orbital electron populations 1.81138 1.11754 1.10254 1.11412 1.24338 0.91147 0.92530 0.91992 1.15352 0.85791 1.10785 1.16072 1.17955 0.86403 0.88579 0.89699 1.41396 1.11242 1.37835 1.49051 1.46016 1.04008 1.31908 1.39384 0.72261 1.77346 1.20169 1.04734 1.10794 1.23221 0.87757 0.94533 0.91527 1.17969 0.97264 0.89755 0.90674 1.20846 1.45993 0.96144 0.91786 0.92376 1.24946 0.95222 0.94818 0.99135 1.69936 1.45816 1.04932 1.32451 0.86558 0.78574 0.78656 0.83685 1.20114 1.21207 1.20211 0.76939 0.75122 0.93790 0.93989 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.14 18.54 41.84 0.78 -9.37 14 2 C 0.31 6.44 15.22 -22.48 -0.34 6.10 14 3 C -0.26 -5.00 6.01 -106.40 -0.64 -5.64 14 4 C 0.41 5.86 8.44 -153.57 -1.30 4.56 14 5 N -0.85 -7.65 9.06 31.43 0.28 -7.36 14 6 N -0.50 -7.14 7.32 31.44 0.23 -6.91 14 7 H 0.43 4.19 8.96 -182.75 -1.64 2.55 14 8 N -0.31 -6.18 12.61 33.91 0.43 -5.75 14 9 C 0.20 4.44 6.45 -82.01 -0.53 3.91 14 10 C 0.08 2.16 5.35 -29.03 -0.16 2.00 14 11 C -0.51 -14.46 9.09 -34.44 -0.31 -14.78 14 12 H 0.06 1.64 7.74 -52.49 -0.41 1.24 14 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 14 14 N -0.89 -26.63 13.29 55.43 0.74 -25.90 14 15 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 14 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 14 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 14 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 14 19 H 0.40 2.14 8.95 -40.82 -0.37 1.77 14 20 H 0.42 3.60 8.68 -40.82 -0.35 3.25 14 21 H 0.04 1.20 8.14 -51.93 -0.42 0.77 14 22 H 0.04 1.16 7.98 -51.93 -0.41 0.75 14 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 14 LS Contribution 226.45 15.07 3.41 3.41 Total: -1.00 -33.46 226.45 -5.26 -38.72 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -2.74 Total: -1.65 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.37 Total: -2.20 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 2.45 Total: -55.29 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -33.46 -5.26 -38.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260781711.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.038 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds