Wall clock time and date at job start Mon Mar 30 2020 01:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47588 * 2 1 4 4 C 1.50707 * 109.47056 * 239.99955 * 2 1 3 5 5 H 1.08002 * 119.99880 * 239.92165 * 4 2 1 6 6 C 1.37879 * 119.99722 * 59.92106 * 4 2 1 7 7 N 1.31513 * 120.00004 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99706 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46876 * 90.00202 * 8 6 4 10 10 H 1.48502 * 109.47428 * 209.99820 * 8 6 4 11 11 H 1.48499 * 109.47769 * 330.00366 * 8 6 4 12 12 C 1.50701 * 109.47363 * 120.00435 * 2 1 3 13 13 C 1.38674 * 120.41746 * 241.73529 * 12 2 1 14 14 C 1.38631 * 118.41907 * 179.78168 * 13 12 2 15 15 C 1.38222 * 119.16255 * 0.50485 * 14 13 12 16 16 N 1.31859 * 120.76086 * 359.73109 * 15 14 13 17 17 C 1.31883 * 121.72961 * 359.97438 * 16 15 14 18 18 H 1.08994 * 109.46914 * 59.99446 * 1 2 3 19 19 H 1.09001 * 109.46685 * 299.99957 * 1 2 3 20 20 H 1.08998 * 109.47242 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46592 * 60.00064 * 3 2 1 22 22 H 1.08993 * 109.47492 * 179.97438 * 3 2 1 23 23 H 1.09003 * 109.46919 * 300.00446 * 3 2 1 24 24 H 0.97002 * 119.99775 * 180.02562 * 7 6 4 25 25 H 1.08007 * 120.79126 * 0.02562 * 13 12 2 26 26 H 1.08007 * 120.41660 * 180.21715 * 14 13 12 27 27 H 1.07994 * 119.61955 * 179.74676 * 15 14 13 28 28 H 1.07995 * 119.61858 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6543 -1.5878 -1.1314 6 6 1.6978 -0.2403 -2.4828 7 7 0.9409 0.8284 -2.6034 8 14 2.3211 -1.1204 -4.0079 9 1 1.3442 -2.1637 -4.4112 10 1 2.4840 -0.1415 -5.1126 11 1 3.6303 -1.7560 -3.7126 12 6 2.0324 -0.7105 1.2304 13 6 2.8003 -0.0350 2.1668 14 6 3.2368 -0.7276 3.2856 15 6 2.9033 -2.0618 3.4243 16 7 2.1751 -2.6734 2.5109 17 6 1.7379 -2.0446 1.4372 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.6768 1.9562 0.8900 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 0.7053 1.1589 -3.4844 25 1 3.0492 1.0071 2.0298 26 1 3.8338 -0.2322 4.0370 27 1 3.2428 -2.6096 4.2909 28 1 1.1434 -2.5788 0.7108 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260845571.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:31 Heat of formation + Delta-G solvation = 8.805535 kcal Electronic energy + Delta-G solvation = -11773.640483 eV Core-core repulsion = 9788.607359 eV Total energy + Delta-G solvation = -1985.033123 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.04201 -37.46871 -33.84917 -32.72464 -30.51789 -27.84971 -27.22822 -24.40373 -23.83491 -20.85615 -18.17990 -17.96272 -16.80007 -16.73672 -15.51884 -14.97838 -14.70801 -14.34673 -13.91608 -13.43051 -13.36201 -13.03596 -12.84310 -12.59752 -12.30251 -12.14384 -11.67839 -11.35683 -10.96646 -10.49340 -10.40881 -10.11687 -9.56788 -8.02358 -6.18509 0.42425 0.56780 1.41536 1.44584 1.52538 2.44649 3.09197 3.21712 3.73613 4.15705 4.24210 4.37417 4.42466 4.75356 4.80499 4.89714 5.03574 5.12615 5.20223 5.32975 5.41038 5.52289 5.65111 5.71547 5.98674 6.11506 6.22156 6.42337 6.85153 7.20752 7.49123 8.96396 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.048711 B = 0.012439 C = 0.011323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.675235 B = 2250.374521 C = 2472.344982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.091 3.909 3 C -0.123 4.123 4 C -0.516 4.516 5 H 0.042 0.958 6 C 0.027 3.973 7 N -0.902 5.902 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C -0.100 4.100 13 C -0.101 4.101 14 C -0.164 4.164 15 C 0.062 3.938 16 N -0.511 5.511 17 C 0.080 3.920 18 H 0.066 0.934 19 H 0.023 0.977 20 H 0.025 0.975 21 H 0.033 0.967 22 H 0.028 0.972 23 H 0.062 0.938 24 H 0.261 0.739 25 H 0.142 0.858 26 H 0.167 0.833 27 H 0.182 0.818 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -0.520 8.017 8.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.090 3.910 3 C -0.180 4.180 4 C -0.554 4.554 5 H 0.060 0.940 6 C -0.172 4.172 7 N -0.540 5.540 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.202 1.202 12 C -0.102 4.102 13 C -0.127 4.127 14 C -0.183 4.183 15 C -0.095 4.095 16 N -0.220 5.220 17 C -0.076 4.076 18 H 0.085 0.915 19 H 0.042 0.958 20 H 0.044 0.956 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.159 0.841 26 H 0.184 0.816 27 H 0.199 0.801 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.723 -1.291 7.982 8.532 hybrid contribution 0.352 0.468 -1.306 1.431 sum 3.074 -0.823 6.676 7.396 Atomic orbital electron populations 1.21679 0.97013 0.98950 0.99963 1.17195 0.92593 0.92422 0.88750 1.21736 0.98304 0.97720 1.00278 1.21242 1.31309 1.11862 0.91020 0.93984 1.25480 0.95185 0.95577 1.00967 1.69916 1.37072 1.23391 1.23656 0.85771 0.78621 0.78536 0.79970 1.20366 1.20765 1.20223 1.21477 0.96276 0.95472 0.96955 1.21907 0.96008 1.01284 0.93530 1.22440 1.01270 0.95915 0.98715 1.23197 0.95209 0.93130 0.97995 1.67621 1.11244 1.40163 1.02985 1.22469 0.98318 0.92340 0.94448 0.91528 0.95818 0.95582 0.94830 0.95268 0.91921 0.92966 0.84075 0.81595 0.80083 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.09 71.98 0.58 -5.00 15 2 C 0.09 4.34 0.59 -53.67 -0.03 4.31 15 3 C -0.12 -5.58 6.93 71.98 0.50 -5.08 15 4 C -0.52 -27.38 7.66 25.60 0.20 -27.18 15 5 H 0.04 2.29 7.56 -2.91 -0.02 2.27 15 6 C 0.03 1.45 5.15 84.66 0.44 1.89 15 7 N -0.90 -48.63 9.35 21.45 0.20 -48.43 15 8 Si 0.94 42.79 29.54 68.60 2.03 44.82 15 9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 12 C -0.10 -4.26 4.72 -19.77 -0.09 -4.35 15 13 C -0.10 -3.62 9.08 22.47 0.20 -3.41 15 14 C -0.16 -4.73 10.11 22.36 0.23 -4.50 15 15 C 0.06 1.88 11.18 84.68 0.95 2.83 15 16 N -0.51 -19.58 10.36 -195.85 -2.03 -21.61 15 17 C 0.08 3.38 9.85 84.67 0.83 4.22 15 18 H 0.07 3.43 6.06 -2.39 -0.01 3.42 15 19 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 20 H 0.03 1.18 7.53 -2.39 -0.02 1.17 15 21 H 0.03 1.33 7.46 -2.39 -0.02 1.31 15 22 H 0.03 1.27 7.63 -2.39 -0.02 1.25 15 23 H 0.06 3.17 6.08 -2.39 -0.01 3.15 15 24 H 0.26 13.52 8.31 -92.71 -0.77 12.75 15 25 H 0.14 4.64 6.05 -2.91 -0.02 4.63 15 26 H 0.17 3.29 8.06 -2.91 -0.02 3.27 15 27 H 0.18 3.97 8.06 -2.91 -0.02 3.95 15 28 H 0.14 6.02 7.67 -2.91 -0.02 6.00 15 Total: -1.00 -57.87 232.53 5.14 -52.74 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.14 Total: 8.78 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 3.80 Total: -36.29 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -1.83 Total: -70.04 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -57.87 5.14 -52.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260845571.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.542 kcal (2) G-P(sol) polarization free energy of solvation -57.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds