Wall clock time and date at job start Mon Mar 30 2020 01:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36337 * 125.63354 * 2 1 4 4 C 1.34884 * 108.21427 * 179.97438 * 3 2 1 5 5 C 1.40861 * 107.42186 * 0.02562 * 4 3 2 6 6 C 1.34883 * 107.41321 * 359.97438 * 5 4 3 7 7 C 1.51187 * 109.39253 * 179.97438 * 5 4 3 8 8 H 1.09002 * 110.28411 * 101.71734 * 7 5 4 9 9 C 1.50702 * 110.28210 * 223.72198 * 7 5 4 10 10 H 1.08001 * 119.99655 * 358.68153 * 9 7 5 11 11 C 1.37879 * 120.00107 * 178.67435 * 9 7 5 12 12 N 1.31518 * 119.99770 * 0.02562 * 11 9 7 13 13 Si 1.86793 * 120.00049 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47174 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47542 * 119.99893 * 13 11 9 16 16 H 1.48504 * 109.47118 * 240.00126 * 13 11 9 17 17 C 1.54345 * 105.27371 * 342.76756 * 7 5 4 18 18 C 1.51192 * 143.17946 * 179.97438 * 4 3 2 19 19 H 1.08997 * 109.47041 * 90.03089 * 1 2 3 20 20 H 1.08997 * 109.46782 * 210.02763 * 1 2 3 21 21 H 1.08997 * 109.47094 * 330.03104 * 1 2 3 22 22 H 1.07996 * 125.89297 * 0.02562 * 3 2 1 23 23 H 1.08001 * 125.89213 * 179.97438 * 6 5 4 24 24 H 0.97001 * 119.99765 * 180.02562 * 12 11 9 25 25 H 1.09000 * 110.74305 * 144.95598 * 17 7 5 26 26 H 1.09004 * 110.74428 * 268.29238 * 17 7 5 27 27 H 1.08995 * 110.29151 * 316.19897 * 18 4 3 28 28 H 1.09001 * 110.28077 * 78.20672 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5463 0.7043 0.0006 5 6 3.5464 -0.7043 0.0003 6 6 2.2594 -1.1080 0.0002 7 6 4.9725 -1.2062 0.0003 8 1 5.2599 -1.5277 1.0014 9 6 5.1261 -2.3432 -0.9769 10 1 4.2711 -2.6943 -1.5355 11 6 6.3582 -2.9350 -1.1578 12 7 7.3993 -2.5076 -0.4772 13 14 6.5488 -4.3437 -2.3696 14 1 5.2369 -4.6332 -3.0025 15 1 7.5317 -3.9663 -3.4169 16 1 7.0292 -5.5521 -1.6523 17 6 5.8282 0.0003 -0.4405 18 6 4.9724 1.2065 0.0006 19 1 -0.3633 -0.0006 -1.0276 20 1 -0.3633 -0.8897 0.5143 21 1 -0.3633 0.8902 0.5133 22 1 1.9171 2.1324 0.0004 23 1 1.9171 -2.1324 -0.0004 24 1 8.2662 -2.9237 -0.6048 25 1 6.7894 0.0002 0.0734 26 1 5.9671 0.0006 -1.5217 27 1 5.0840 2.0276 -0.7076 28 1 5.2591 1.5298 1.0013 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260929740.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:20 Heat of formation + Delta-G solvation = 32.917442 kcal Electronic energy + Delta-G solvation = -11595.667092 eV Core-core repulsion = 9611.679540 eV Total energy + Delta-G solvation = -1983.987553 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.10443 -37.44512 -34.43412 -31.77565 -30.69654 -28.03261 -26.47777 -25.22525 -21.91973 -20.45161 -19.65389 -18.22793 -17.30783 -16.41144 -16.00180 -15.21798 -14.87174 -14.58203 -13.93834 -13.47017 -13.22250 -13.01157 -12.95027 -12.69426 -12.33061 -12.24660 -11.94176 -11.54370 -11.13186 -10.91336 -10.46132 -8.84529 -8.75345 -8.05880 -6.17191 1.40534 1.41179 1.52110 1.54507 2.25718 2.29658 2.48653 3.21977 3.88260 4.30811 4.35221 4.54370 4.55472 4.59571 4.65994 4.76533 4.92615 5.08573 5.23522 5.33337 5.63084 5.73248 5.82326 5.91143 5.99597 6.29126 6.47134 6.54691 6.81956 6.92016 7.49498 9.01365 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.048572 B = 0.011560 C = 0.009739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.326538 B = 2421.461762 C = 2874.427840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.455 5.455 3 C 0.004 3.996 4 C -0.232 4.232 5 C -0.187 4.187 6 C -0.027 4.027 7 C 0.105 3.895 8 H -0.007 1.007 9 C -0.522 4.522 10 H 0.046 0.954 11 C 0.009 3.991 12 N -0.922 5.922 13 Si 0.956 3.044 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.278 1.278 17 C -0.081 4.081 18 C -0.035 4.035 19 H 0.079 0.921 20 H 0.091 0.909 21 H 0.105 0.895 22 H 0.194 0.806 23 H 0.161 0.839 24 H 0.261 0.739 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.097 6.167 0.415 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.132 5.132 3 C -0.126 4.126 4 C -0.239 4.239 5 C -0.194 4.194 6 C -0.155 4.155 7 C 0.086 3.914 8 H 0.011 0.989 9 C -0.560 4.560 10 H 0.065 0.935 11 C -0.189 4.189 12 N -0.562 5.562 13 Si 0.782 3.218 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.204 1.204 17 C -0.119 4.119 18 C -0.073 4.073 19 H 0.097 0.903 20 H 0.109 0.891 21 H 0.123 0.877 22 H 0.211 0.789 23 H 0.178 0.822 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.329 6.121 0.440 13.772 hybrid contribution 0.653 -1.043 -0.511 1.332 sum -11.676 5.079 -0.071 12.733 Atomic orbital electron populations 1.22216 0.74454 1.05678 1.04050 1.44073 1.07348 1.04416 1.57331 1.21148 0.88254 0.92389 1.10820 1.20730 0.95135 0.95791 1.12264 1.20975 0.95154 0.96328 1.06921 1.20877 0.89417 0.91880 1.13356 1.17638 0.86620 0.93179 0.93942 0.98937 1.21496 0.94434 1.16882 1.23220 0.93538 1.25793 0.95682 0.99577 0.97830 1.70105 1.00339 1.43082 1.42653 0.85533 0.78062 0.79252 0.78970 1.19373 1.20452 1.20370 1.21967 0.97224 0.94410 0.98311 1.20378 0.89411 0.97188 1.00291 0.90294 0.89060 0.87661 0.78934 0.82154 0.93054 0.93730 0.94954 0.91319 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 11.12 127.77 1.42 2.82 15 2 N -0.45 -14.46 3.15 -547.86 -1.72 -16.18 15 3 C 0.00 0.12 11.44 83.22 0.95 1.07 15 4 C -0.23 -9.87 6.91 -19.84 -0.14 -10.01 15 5 C -0.19 -9.15 6.17 -19.84 -0.12 -9.28 15 6 C -0.03 -1.10 11.44 83.22 0.95 -0.15 15 7 C 0.11 5.95 2.77 -11.67 -0.03 5.92 15 8 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 15 9 C -0.52 -31.27 8.45 25.60 0.22 -31.06 15 10 H 0.05 2.77 7.76 -2.91 -0.02 2.75 15 11 C 0.01 0.54 5.33 84.65 0.45 0.99 15 12 N -0.92 -56.23 12.39 21.45 0.27 -55.96 15 13 Si 0.96 45.78 29.54 68.60 2.03 47.81 15 14 H -0.27 -12.54 7.11 99.48 0.71 -11.84 15 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 15 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 17 C -0.08 -4.23 5.67 31.50 0.18 -4.05 15 18 C -0.03 -1.48 6.76 30.46 0.21 -1.27 15 19 H 0.08 1.27 8.14 -2.39 -0.02 1.25 15 20 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 21 H 0.10 1.35 8.14 -2.39 -0.02 1.33 15 22 H 0.19 4.60 8.06 -2.91 -0.02 4.57 15 23 H 0.16 6.05 8.06 -2.91 -0.02 6.03 15 24 H 0.26 14.95 8.31 -92.71 -0.77 14.18 15 25 H 0.04 2.42 7.90 -2.39 -0.02 2.40 15 26 H 0.03 1.76 7.91 -2.38 -0.02 1.74 15 27 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 28 H 0.06 2.55 8.14 -2.39 -0.02 2.53 15 Total: -1.00 -71.18 239.29 5.78 -65.40 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.13 Total: 3.96 kcal Atomic # 6 Polarization: -49.10 SS G_CDS: 4.08 Total: -45.02 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -1.46 Total: -72.15 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.18 5.78 -65.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929740.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.316 kcal (2) G-P(sol) polarization free energy of solvation -71.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds