Wall clock time and date at job start Mon Mar 30 2020 01:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36740 * 125.65203 * 2 1 4 4 C 1.34878 * 108.16758 * 180.02562 * 3 2 1 5 5 C 1.41019 * 107.39725 * 359.93888 * 4 3 2 6 6 C 1.34886 * 107.50380 * 359.97438 * 5 4 3 7 7 C 1.51186 * 109.30799 * 180.02562 * 5 4 3 8 8 H 1.09001 * 110.28617 * 258.12503 * 7 5 4 9 9 C 1.50706 * 110.28547 * 136.12404 * 7 5 4 10 10 H 1.07997 * 119.99867 * 1.32302 * 9 7 5 11 11 C 1.37878 * 119.99931 * 181.32591 * 9 7 5 12 12 N 1.31517 * 119.99998 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99725 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47299 * 59.99977 * 13 11 9 15 15 H 1.48501 * 109.47057 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47227 * 299.99791 * 13 11 9 17 17 C 1.54339 * 105.35460 * 17.12226 * 7 5 4 18 18 C 1.51193 * 143.18562 * 179.83484 * 4 3 2 19 19 H 1.09005 * 109.47106 * 270.09605 * 1 2 3 20 20 H 1.09001 * 109.47693 * 30.10049 * 1 2 3 21 21 H 1.09003 * 109.47413 * 150.10078 * 1 2 3 22 22 H 1.07993 * 125.93539 * 359.87562 * 3 2 1 23 23 H 1.08004 * 125.88963 * 180.02562 * 6 5 4 24 24 H 0.96998 * 119.99694 * 180.02562 * 12 11 9 25 25 H 1.09003 * 110.74355 * 91.75933 * 17 7 5 26 26 H 1.08997 * 110.75094 * 214.90945 * 17 7 5 27 27 H 1.08997 * 110.28276 * 43.84504 * 18 4 3 28 28 H 1.08994 * 110.28434 * 281.74168 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2619 1.1111 0.0000 4 6 3.5484 0.7059 -0.0006 5 6 3.5463 -0.7043 0.0005 6 6 2.2592 -1.1080 0.0023 7 6 4.9723 -1.2064 0.0005 8 1 5.2587 -1.5311 -0.9998 9 6 5.1270 -2.3403 0.9811 10 1 4.2726 -2.6897 1.5417 11 6 6.3593 -2.9315 1.1625 12 7 7.3996 -2.5063 0.4794 13 14 6.5511 -4.3366 2.3785 14 1 5.6688 -5.4618 1.9780 15 1 7.9640 -4.7938 2.3877 16 1 6.1734 -3.8706 3.7369 17 6 5.8302 -0.0001 0.4376 18 6 4.9751 1.2063 -0.0036 19 1 -0.3633 0.0017 1.0277 20 1 -0.3634 0.8891 -0.5154 21 1 -0.3634 -0.8909 -0.5123 22 1 1.9208 2.1358 -0.0019 23 1 1.9170 -2.1324 0.0038 24 1 8.2665 -2.9226 0.6068 25 1 5.9713 0.0019 1.5185 26 1 6.7918 -0.0040 -0.0756 27 1 5.0885 2.0290 0.7025 28 1 5.2616 1.5252 -1.0057 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260929741.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:22 Heat of formation + Delta-G solvation = 51.125725 kcal Electronic energy + Delta-G solvation = -11593.531471 eV Core-core repulsion = 9610.333488 eV Total energy + Delta-G solvation = -1983.197982 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.51939 -35.67408 -32.38166 -30.31941 -28.90869 -26.18563 -25.10237 -23.20363 -20.21496 -18.75575 -18.03099 -16.13850 -15.71511 -14.67070 -14.38271 -13.53947 -13.26224 -13.13142 -12.23152 -11.99035 -11.66914 -11.41656 -11.07114 -10.78227 -10.44762 -10.36462 -10.16851 -9.62805 -9.18174 -8.81047 -8.27260 -7.30942 -7.09144 -5.87097 -3.88861 3.00683 3.39970 3.43996 3.46976 3.58089 3.98674 4.56491 5.01867 5.37707 5.44549 5.54907 5.62666 5.78401 6.05474 6.33793 6.44410 6.59385 6.83016 7.04111 7.33377 7.44368 7.51352 7.80638 7.88876 8.05656 8.11791 8.17390 8.27383 8.63091 9.12609 9.73739 11.21713 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.048549 B = 0.011561 C = 0.009739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.603168 B = 2421.444334 C = 2874.287320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.467 5.467 3 C -0.022 4.022 4 C -0.196 4.196 5 C -0.135 4.135 6 C -0.024 4.024 7 C 0.111 3.889 8 H 0.035 0.965 9 C -0.503 4.503 10 H 0.053 0.947 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.889 3.111 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.279 1.279 17 C -0.087 4.087 18 C -0.046 4.046 19 H 0.061 0.939 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.148 0.852 23 H 0.152 0.848 24 H 0.259 0.741 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 5.333 -1.027 11.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.147 5.147 3 C -0.149 4.149 4 C -0.204 4.204 5 C -0.141 4.141 6 C -0.150 4.150 7 C 0.092 3.908 8 H 0.053 0.947 9 C -0.542 4.542 10 H 0.072 0.928 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.717 3.283 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.126 4.126 18 C -0.084 4.084 19 H 0.079 0.921 20 H 0.092 0.908 21 H 0.094 0.906 22 H 0.165 0.835 23 H 0.169 0.831 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.907 5.282 -1.052 11.277 hybrid contribution 0.000 -0.792 0.744 1.087 sum -9.908 4.490 -0.308 10.882 Atomic orbital electron populations 1.21757 0.78504 1.03212 1.02120 1.43823 1.05020 1.05778 1.60069 1.20631 0.89462 0.90401 1.14407 1.20603 0.93707 0.96898 1.09215 1.21112 0.95393 0.94576 1.03007 1.20744 0.89769 0.90370 1.14084 1.17773 0.83518 0.92865 0.96658 0.94722 1.21146 0.94373 1.16055 1.22588 0.92835 1.24975 0.96106 0.96972 0.96050 1.69956 1.00000 1.41957 1.41331 0.86718 0.76809 0.82858 0.81931 1.20442 1.21420 1.20435 1.22196 0.97600 0.92573 1.00190 1.20562 0.89862 0.98651 0.99308 0.92050 0.90841 0.90600 0.83468 0.83061 0.93147 0.92815 0.91660 0.93546 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 11.12 59.84 0.67 1.67 15 2 N -0.47 -8.23 3.16 -124.40 -0.39 -8.63 15 3 C -0.02 -0.40 11.46 -16.55 -0.19 -0.59 15 4 C -0.20 -4.29 6.92 -104.52 -0.72 -5.01 15 5 C -0.13 -3.24 6.18 -104.52 -0.65 -3.89 15 6 C -0.02 -0.50 11.44 -16.74 -0.19 -0.69 15 7 C 0.11 2.98 2.77 -91.98 -0.25 2.72 15 8 H 0.03 1.01 8.14 -51.93 -0.42 0.59 15 9 C -0.50 -14.50 8.45 -34.44 -0.29 -14.79 15 10 H 0.05 1.54 7.76 -52.49 -0.41 1.13 15 11 C 0.06 1.71 5.33 -17.82 -0.09 1.61 15 12 N -0.89 -26.29 12.38 55.43 0.69 -25.60 15 13 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 15 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 15 H -0.29 -7.03 7.11 56.52 0.40 -6.62 15 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 17 C -0.09 -2.18 5.67 -25.34 -0.14 -2.32 15 18 C -0.05 -0.97 6.76 -26.95 -0.18 -1.15 15 19 H 0.06 0.65 8.14 -51.93 -0.42 0.22 15 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.15 2.19 8.06 -52.49 -0.42 1.77 15 23 H 0.15 2.90 8.06 -52.48 -0.42 2.47 15 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 25 H 0.05 1.40 7.91 -51.93 -0.41 0.99 15 26 H 0.06 1.67 7.89 -51.93 -0.41 1.26 15 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 LS Contribution 239.30 15.07 3.61 3.61 Total: -1.00 -31.55 239.30 -6.92 -38.47 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -3.74 Total: -2.31 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -2.05 Total: -22.43 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.29 Total: -34.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.55 -6.92 -38.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929741.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.597 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds