Wall clock time and date at job start Mon Mar 30 2020 01:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36740 * 125.65203 * 2 1 4 4 C 1.34878 * 108.16758 * 180.02562 * 3 2 1 5 5 C 1.41019 * 107.39725 * 359.93888 * 4 3 2 6 6 C 1.34886 * 107.50380 * 359.97438 * 5 4 3 7 7 C 1.51186 * 109.30799 * 180.02562 * 5 4 3 8 8 H 1.09001 * 110.28617 * 258.12503 * 7 5 4 9 9 C 1.50706 * 110.28547 * 136.12404 * 7 5 4 10 10 H 1.07997 * 119.99867 * 1.32302 * 9 7 5 11 11 C 1.37878 * 119.99931 * 181.32591 * 9 7 5 12 12 N 1.31517 * 119.99998 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99725 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47299 * 59.99977 * 13 11 9 15 15 H 1.48501 * 109.47057 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47227 * 299.99791 * 13 11 9 17 17 C 1.54339 * 105.35460 * 17.12226 * 7 5 4 18 18 C 1.51193 * 143.18562 * 179.83484 * 4 3 2 19 19 H 1.09005 * 109.47106 * 270.09605 * 1 2 3 20 20 H 1.09001 * 109.47693 * 30.10049 * 1 2 3 21 21 H 1.09003 * 109.47413 * 150.10078 * 1 2 3 22 22 H 1.07993 * 125.93539 * 359.87562 * 3 2 1 23 23 H 1.08004 * 125.88963 * 180.02562 * 6 5 4 24 24 H 0.96998 * 119.99694 * 180.02562 * 12 11 9 25 25 H 1.09003 * 110.74355 * 91.75933 * 17 7 5 26 26 H 1.08997 * 110.75094 * 214.90945 * 17 7 5 27 27 H 1.08997 * 110.28276 * 43.84504 * 18 4 3 28 28 H 1.08994 * 110.28434 * 281.74168 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2619 1.1111 0.0000 4 6 3.5484 0.7059 -0.0006 5 6 3.5463 -0.7043 0.0005 6 6 2.2592 -1.1080 0.0023 7 6 4.9723 -1.2064 0.0005 8 1 5.2587 -1.5311 -0.9998 9 6 5.1270 -2.3403 0.9811 10 1 4.2726 -2.6897 1.5417 11 6 6.3593 -2.9315 1.1625 12 7 7.3996 -2.5063 0.4794 13 14 6.5511 -4.3366 2.3785 14 1 5.6688 -5.4618 1.9780 15 1 7.9640 -4.7938 2.3877 16 1 6.1734 -3.8706 3.7369 17 6 5.8302 -0.0001 0.4376 18 6 4.9751 1.2063 -0.0036 19 1 -0.3633 0.0017 1.0277 20 1 -0.3634 0.8891 -0.5154 21 1 -0.3634 -0.8909 -0.5123 22 1 1.9208 2.1358 -0.0019 23 1 1.9170 -2.1324 0.0038 24 1 8.2665 -2.9226 0.6068 25 1 5.9713 0.0019 1.5185 26 1 6.7918 -0.0040 -0.0756 27 1 5.0885 2.0290 0.7025 28 1 5.2616 1.5252 -1.0057 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260929741.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:22 Heat of formation + Delta-G solvation = 32.689205 kcal Electronic energy + Delta-G solvation = -11594.330938 eV Core-core repulsion = 9610.333488 eV Total energy + Delta-G solvation = -1983.997450 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.06003 -37.43149 -34.42943 -31.76880 -30.69605 -28.02450 -26.46858 -25.21789 -21.91924 -20.44925 -19.64431 -18.22036 -17.29878 -16.41315 -15.98868 -15.20969 -14.86969 -14.58442 -13.93059 -13.47428 -13.21782 -13.00289 -12.93982 -12.67139 -12.36241 -12.25091 -11.94156 -11.54077 -11.12445 -10.92358 -10.45235 -8.84415 -8.75123 -8.05327 -6.16862 1.40879 1.43751 1.50633 1.53022 2.25553 2.29313 2.48902 3.22325 3.88098 4.31066 4.35162 4.54518 4.55552 4.59636 4.65849 4.76619 4.92528 5.08483 5.23544 5.33395 5.62903 5.73641 5.81863 5.91318 5.99599 6.29221 6.47229 6.54510 6.81917 6.91893 7.49671 9.01475 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.048549 B = 0.011561 C = 0.009739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.603168 B = 2421.444334 C = 2874.287320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.457 5.457 3 C 0.003 3.997 4 C -0.231 4.231 5 C -0.188 4.188 6 C -0.025 4.025 7 C 0.106 3.894 8 H -0.008 1.008 9 C -0.525 4.525 10 H 0.046 0.954 11 C 0.010 3.990 12 N -0.922 5.922 13 Si 0.956 3.044 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.273 1.273 17 C -0.081 4.081 18 C -0.035 4.035 19 H 0.078 0.922 20 H 0.105 0.895 21 H 0.091 0.909 22 H 0.194 0.806 23 H 0.161 0.839 24 H 0.261 0.739 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.068 6.147 -0.428 13.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.134 5.134 3 C -0.126 4.126 4 C -0.238 4.238 5 C -0.195 4.195 6 C -0.153 4.153 7 C 0.087 3.913 8 H 0.010 0.990 9 C -0.563 4.563 10 H 0.065 0.935 11 C -0.188 4.188 12 N -0.561 5.561 13 Si 0.781 3.219 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.198 1.198 17 C -0.119 4.119 18 C -0.073 4.073 19 H 0.097 0.903 20 H 0.123 0.877 21 H 0.109 0.891 22 H 0.211 0.789 23 H 0.179 0.821 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.291 6.102 -0.456 13.730 hybrid contribution 0.633 -1.043 0.525 1.328 sum -11.658 5.059 0.068 12.708 Atomic orbital electron populations 1.22208 0.74475 1.05651 1.04018 1.44177 1.07310 1.04395 1.57556 1.21231 0.88197 0.92319 1.10859 1.20766 0.95133 0.95785 1.12087 1.21007 0.95147 0.96305 1.07041 1.20878 0.89406 0.91884 1.13142 1.17627 0.86626 0.93160 0.93917 0.98963 1.21446 0.94474 1.17192 1.23174 0.93525 1.25791 0.95663 0.99541 0.97832 1.70090 1.00359 1.43116 1.42564 0.85649 0.77083 0.79642 0.79496 1.19561 1.20665 1.19838 1.21963 0.97229 0.94414 0.98313 1.20373 0.89383 0.97200 1.00303 0.90327 0.87694 0.89072 0.78916 0.82122 0.93041 0.95012 0.93706 0.91284 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 11.12 127.77 1.42 2.83 15 2 N -0.46 -14.54 3.16 -547.49 -1.73 -16.27 15 3 C 0.00 0.11 11.46 83.16 0.95 1.06 15 4 C -0.23 -9.81 6.92 -19.80 -0.14 -9.95 15 5 C -0.19 -9.21 6.18 -19.80 -0.12 -9.33 15 6 C -0.02 -1.01 11.44 83.22 0.95 -0.06 15 7 C 0.11 5.98 2.77 -11.68 -0.03 5.95 15 8 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 15 9 C -0.52 -31.43 8.45 25.60 0.22 -31.21 15 10 H 0.05 2.77 7.76 -2.91 -0.02 2.74 15 11 C 0.01 0.58 5.33 84.65 0.45 1.03 15 12 N -0.92 -56.23 12.38 21.45 0.27 -55.97 15 13 Si 0.96 45.73 29.54 68.60 2.03 47.76 15 14 H -0.27 -12.49 7.11 99.48 0.71 -11.79 15 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 16 H -0.27 -12.74 7.11 99.48 0.71 -12.04 15 17 C -0.08 -4.23 5.67 31.50 0.18 -4.05 15 18 C -0.03 -1.47 6.76 30.45 0.21 -1.27 15 19 H 0.08 1.26 8.14 -2.38 -0.02 1.24 15 20 H 0.10 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 22 H 0.19 4.60 8.06 -2.91 -0.02 4.58 15 23 H 0.16 6.05 8.06 -2.91 -0.02 6.03 15 24 H 0.26 15.04 8.31 -92.71 -0.77 14.27 15 25 H 0.03 1.73 7.91 -2.39 -0.02 1.71 15 26 H 0.04 2.43 7.89 -2.39 -0.02 2.41 15 27 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 28 H 0.06 2.56 8.14 -2.39 -0.02 2.54 15 Total: -1.00 -71.07 239.30 5.77 -65.30 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.13 Total: 4.18 kcal Atomic # 6 Polarization: -49.09 SS G_CDS: 4.09 Total: -45.00 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -1.46 Total: -72.23 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -71.07 5.77 -65.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929741.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.987 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds