Wall clock time and date at job start Mon Mar 30 2020 01:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.80421 * 2 1 4 4 C 1.54337 * 110.74441 * 236.70018 * 2 1 3 5 5 C 1.51183 * 105.26919 * 215.04625 * 4 2 1 6 6 C 1.34890 * 143.18374 * 197.24432 * 5 4 2 7 7 N 1.36333 * 108.21676 * 180.02562 * 6 5 4 8 8 H 0.97001 * 125.63534 * 179.97438 * 7 6 5 9 9 C 1.36336 * 108.73086 * 359.97438 * 7 6 5 10 10 C 1.34885 * 108.21894 * 359.97438 * 9 7 6 11 11 C 1.51187 * 143.19450 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.28663 * 281.81957 * 11 10 9 13 13 C 1.50702 * 110.28033 * 43.82639 * 11 10 9 14 14 H 1.08002 * 120.00299 * 118.55080 * 13 11 10 15 15 C 1.37884 * 119.99942 * 298.26638 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09007 * 109.47252 * 296.70174 * 1 2 3 22 22 H 1.09000 * 109.46931 * 56.70023 * 1 2 3 23 23 H 1.09001 * 109.47223 * 176.70218 * 1 2 3 24 24 H 1.09001 * 110.29248 * 96.09672 * 4 2 1 25 25 H 1.09006 * 110.36353 * 334.03306 * 4 2 1 26 26 H 1.07990 * 125.89216 * 359.96660 * 6 5 4 27 27 H 1.08005 * 125.89154 * 180.02562 * 9 7 6 28 28 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0190 0.0000 4 6 2.0767 -0.7924 -1.2063 5 6 3.3343 -1.4646 -0.7042 6 6 4.4694 -2.0712 -1.1081 7 7 5.1696 -2.4463 0.0000 8 1 6.0249 -2.9039 -0.0001 9 6 4.4692 -2.0719 1.1081 10 6 3.3347 -1.4640 0.7044 11 6 2.0776 -0.7907 1.2064 12 1 1.3521 -1.5373 1.5292 13 6 2.4039 0.1448 2.3419 14 1 2.2023 1.2015 2.2461 15 6 2.9545 -0.3491 3.5055 16 7 3.2001 -1.6359 3.6223 17 14 3.3519 0.8094 4.9159 18 1 2.9830 2.1967 4.5360 19 1 2.5825 0.4052 6.1202 20 1 4.8055 0.7470 5.2133 21 1 -0.3634 0.4618 0.9181 22 1 -0.3633 0.5642 -0.8589 23 1 -0.3634 -1.0260 -0.0591 24 1 2.3121 -0.1157 -2.0278 25 1 1.3518 -1.5398 -1.5291 26 1 4.7710 -2.2328 -2.1323 27 1 4.7710 -2.2333 2.1324 28 1 3.5878 -1.9833 4.4408 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260944626.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:46 Heat of formation + Delta-G solvation = 43.467946 kcal Electronic energy + Delta-G solvation = -11879.190171 eV Core-core repulsion = 9895.660123 eV Total energy + Delta-G solvation = -1983.530049 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.18095 -35.92870 -32.45876 -29.75881 -28.38697 -26.30280 -25.35450 -22.91903 -19.71429 -18.43563 -17.71217 -16.54261 -16.01427 -14.46215 -13.81352 -13.13636 -12.70839 -12.62206 -12.18676 -11.90228 -11.59926 -11.31314 -10.96518 -10.64676 -10.36772 -10.14934 -9.97424 -9.68580 -9.19331 -8.81626 -8.27951 -7.17698 -6.68337 -5.89472 -3.91768 3.34436 3.40441 3.42738 3.47198 4.36075 4.38311 4.55311 5.42534 5.65908 5.99330 6.01370 6.13932 6.32557 6.51556 6.59726 6.62835 6.81573 6.86623 7.17279 7.20204 7.43858 7.60958 7.68253 7.99857 8.07273 8.28076 8.50511 8.62187 8.81105 9.12707 9.70228 11.18509 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.034056 B = 0.016687 C = 0.012088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.966891 B = 1677.518241 C = 2315.734629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 H 0.066 0.934 4 C -0.031 4.031 5 C -0.219 4.219 6 C -0.036 4.036 7 N -0.579 5.579 8 H 0.402 0.598 9 C 0.007 3.993 10 C -0.109 4.109 11 C 0.111 3.889 12 H 0.034 0.966 13 C -0.497 4.497 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.887 5.887 17 Si 0.885 3.115 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.287 1.287 21 H 0.055 0.945 22 H 0.037 0.963 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.142 0.858 27 H 0.172 0.828 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 -0.577 -6.391 6.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.069 4.069 5 C -0.228 4.228 6 C -0.165 4.165 7 N -0.176 5.176 8 H 0.236 0.764 9 C -0.121 4.121 10 C -0.115 4.115 11 C 0.092 3.908 12 H 0.052 0.948 13 C -0.535 4.535 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.714 3.286 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.213 1.213 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.159 0.841 27 H 0.189 0.811 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.210 -0.758 -6.245 6.406 hybrid contribution 0.836 0.316 0.837 1.225 sum 2.046 -0.442 -5.408 5.799 Atomic orbital electron populations 1.21692 0.96232 1.00586 1.00395 1.21944 0.93928 0.99192 0.95671 0.91587 1.20377 0.92703 0.96733 0.97040 1.20483 0.97257 1.07284 0.97749 1.20414 0.95682 1.09909 0.90511 1.42043 1.19690 1.49711 1.06177 0.76403 1.21641 0.94499 1.05529 0.90386 1.20611 0.97615 1.01200 0.92123 1.17787 0.89405 0.92907 0.90723 0.94796 1.21294 1.39851 0.93821 0.98566 0.92700 1.24932 0.95916 0.94891 0.98181 1.69984 1.44560 1.11809 1.26320 0.86648 0.77818 0.81487 0.82692 1.19908 1.21221 1.21301 0.92552 0.94393 0.93479 0.93702 0.92675 0.84059 0.81125 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.11 37.16 0.34 -2.12 15 2 C -0.09 -1.94 3.13 -89.25 -0.28 -2.22 15 3 H 0.07 1.48 7.79 -51.93 -0.40 1.08 15 4 C -0.03 -0.62 6.30 -26.95 -0.17 -0.79 15 5 C -0.22 -4.93 6.91 -104.58 -0.72 -5.66 15 6 C -0.04 -0.71 11.94 -16.74 -0.20 -0.91 15 7 N -0.58 -11.25 6.07 -12.84 -0.08 -11.33 15 8 H 0.40 6.05 8.96 -40.82 -0.37 5.69 15 9 C 0.01 0.16 11.10 -16.74 -0.19 -0.02 15 10 C -0.11 -2.80 5.67 -104.58 -0.59 -3.40 15 11 C 0.11 2.89 2.35 -92.01 -0.22 2.67 15 12 H 0.03 0.97 7.89 -51.93 -0.41 0.56 15 13 C -0.50 -13.92 8.52 -34.44 -0.29 -14.21 15 14 H 0.05 1.53 7.63 -52.49 -0.40 1.13 15 15 C 0.06 1.69 5.29 -17.82 -0.09 1.60 15 16 N -0.89 -25.09 10.39 55.43 0.58 -24.52 15 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 15 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 21 H 0.06 1.07 8.14 -51.92 -0.42 0.65 15 22 H 0.04 0.60 8.14 -51.93 -0.42 0.17 15 23 H 0.05 0.85 8.06 -51.93 -0.42 0.43 15 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.05 1.04 7.84 -51.93 -0.41 0.63 15 26 H 0.14 2.24 8.06 -52.49 -0.42 1.81 15 27 H 0.17 4.31 6.43 -52.48 -0.34 3.97 15 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 LS Contribution 233.06 15.07 3.51 3.51 Total: -1.00 -30.15 233.06 -7.00 -37.14 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.57 Total: 3.81 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -2.42 Total: -25.06 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.50 Total: -35.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.15 -7.00 -37.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944626.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.610 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds