Wall clock time and date at job start Mon Mar 30 2020 01:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.80421 * 2 1 4 4 C 1.54337 * 110.74441 * 236.70018 * 2 1 3 5 5 C 1.51183 * 105.26919 * 215.04625 * 4 2 1 6 6 C 1.34890 * 143.18374 * 197.24432 * 5 4 2 7 7 N 1.36333 * 108.21676 * 180.02562 * 6 5 4 8 8 H 0.97001 * 125.63534 * 179.97438 * 7 6 5 9 9 C 1.36336 * 108.73086 * 359.97438 * 7 6 5 10 10 C 1.34885 * 108.21894 * 359.97438 * 9 7 6 11 11 C 1.51187 * 143.19450 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.28663 * 281.81957 * 11 10 9 13 13 C 1.50702 * 110.28033 * 43.82639 * 11 10 9 14 14 H 1.08002 * 120.00299 * 118.55080 * 13 11 10 15 15 C 1.37884 * 119.99942 * 298.26638 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09007 * 109.47252 * 296.70174 * 1 2 3 22 22 H 1.09000 * 109.46931 * 56.70023 * 1 2 3 23 23 H 1.09001 * 109.47223 * 176.70218 * 1 2 3 24 24 H 1.09001 * 110.29248 * 96.09672 * 4 2 1 25 25 H 1.09006 * 110.36353 * 334.03306 * 4 2 1 26 26 H 1.07990 * 125.89216 * 359.96660 * 6 5 4 27 27 H 1.08005 * 125.89154 * 180.02562 * 9 7 6 28 28 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0190 0.0000 4 6 2.0767 -0.7924 -1.2063 5 6 3.3343 -1.4646 -0.7042 6 6 4.4694 -2.0712 -1.1081 7 7 5.1696 -2.4463 0.0000 8 1 6.0249 -2.9039 -0.0001 9 6 4.4692 -2.0719 1.1081 10 6 3.3347 -1.4640 0.7044 11 6 2.0776 -0.7907 1.2064 12 1 1.3521 -1.5373 1.5292 13 6 2.4039 0.1448 2.3419 14 1 2.2023 1.2015 2.2461 15 6 2.9545 -0.3491 3.5055 16 7 3.2001 -1.6359 3.6223 17 14 3.3519 0.8094 4.9159 18 1 2.9830 2.1967 4.5360 19 1 2.5825 0.4052 6.1202 20 1 4.8055 0.7470 5.2133 21 1 -0.3634 0.4618 0.9181 22 1 -0.3633 0.5642 -0.8589 23 1 -0.3634 -1.0260 -0.0591 24 1 2.3121 -0.1157 -2.0278 25 1 1.3518 -1.5398 -1.5291 26 1 4.7710 -2.2328 -2.1323 27 1 4.7710 -2.2333 2.1324 28 1 3.5878 -1.9833 4.4408 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260944626.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:46 Heat of formation + Delta-G solvation = 25.534706 kcal Electronic energy + Delta-G solvation = -11879.967815 eV Core-core repulsion = 9895.660123 eV Total energy + Delta-G solvation = -1984.307692 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.87030 -37.65337 -34.52105 -31.38638 -30.23953 -28.18845 -26.91933 -24.89873 -21.40232 -20.22388 -19.44975 -18.23771 -18.00709 -16.47984 -15.54865 -14.85119 -14.35932 -14.23465 -13.97950 -13.76731 -13.20640 -13.11763 -12.85468 -12.43551 -12.28832 -11.95925 -11.62959 -11.42527 -11.13577 -10.68692 -10.39652 -8.83953 -8.48471 -8.00892 -6.10371 1.40199 1.42283 1.53164 1.76645 2.44497 2.57682 2.85656 3.28051 4.00344 4.40140 4.45395 4.65966 4.81597 4.90084 4.97807 5.05156 5.16247 5.29308 5.43044 5.46130 5.68883 5.78852 5.93044 6.00345 6.10688 6.41949 6.53797 6.79419 7.03843 7.25278 7.54015 9.06006 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.034056 B = 0.016687 C = 0.012088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.966891 B = 1677.518241 C = 2315.734629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.088 4.088 3 H 0.054 0.946 4 C -0.023 4.023 5 C -0.249 4.249 6 C -0.007 4.007 7 N -0.561 5.561 8 H 0.424 0.576 9 C -0.017 4.017 10 C -0.152 4.152 11 C 0.103 3.897 12 H -0.006 1.006 13 C -0.520 4.520 14 H 0.047 0.953 15 C 0.016 3.984 16 N -0.907 5.907 17 Si 0.947 3.053 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 H 0.042 0.958 22 H 0.072 0.928 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.193 0.807 27 H 0.151 0.849 28 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -0.316 -8.035 8.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.107 4.107 3 H 0.073 0.927 4 C -0.061 4.061 5 C -0.257 4.257 6 C -0.137 4.137 7 N -0.160 5.160 8 H 0.262 0.738 9 C -0.146 4.146 10 C -0.159 4.159 11 C 0.084 3.916 12 H 0.012 0.988 13 C -0.559 4.559 14 H 0.065 0.935 15 C -0.182 4.182 16 N -0.547 5.547 17 Si 0.773 3.227 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.208 1.208 21 H 0.062 0.938 22 H 0.091 0.909 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.209 0.791 27 H 0.169 0.831 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.837 -0.510 -7.894 8.121 hybrid contribution 0.680 0.189 1.345 1.519 sum 2.517 -0.321 -6.549 7.023 Atomic orbital electron populations 1.21626 0.94070 1.01216 1.01310 1.21895 0.95829 0.98093 0.94835 0.92721 1.20330 0.92027 0.97076 0.96636 1.20911 0.99313 1.09194 0.96283 1.21133 0.93927 1.06492 0.92183 1.41933 1.20216 1.48838 1.04967 0.73811 1.21360 0.95351 1.06944 0.90927 1.20789 0.98015 1.02611 0.94462 1.17784 0.89476 0.92254 0.92081 0.98816 1.21576 1.40450 0.93822 1.00017 0.93503 1.25634 0.95783 0.96362 1.00405 1.70113 1.44671 1.13096 1.26802 0.85684 0.77616 0.79636 0.79741 1.19603 1.20716 1.20845 0.93845 0.90911 0.93296 0.91103 0.91400 0.79051 0.83146 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.11 71.98 0.66 -3.90 15 2 C -0.09 -3.82 3.13 -9.90 -0.03 -3.85 15 3 H 0.05 2.45 7.79 -2.39 -0.02 2.43 15 4 C -0.02 -0.88 6.30 30.45 0.19 -0.69 15 5 C -0.25 -10.76 6.91 -19.84 -0.14 -10.90 15 6 C -0.01 -0.26 11.94 83.22 0.99 0.74 15 7 N -0.56 -20.61 6.07 -194.52 -1.18 -21.79 15 8 H 0.42 11.61 8.96 -92.71 -0.83 10.78 15 9 C -0.02 -0.83 11.10 83.22 0.92 0.09 15 10 C -0.15 -7.88 5.67 -19.84 -0.11 -7.99 15 11 C 0.10 5.54 2.35 -11.70 -0.03 5.52 15 12 H -0.01 -0.36 7.89 -2.39 -0.02 -0.38 15 13 C -0.52 -30.08 8.52 25.60 0.22 -29.86 15 14 H 0.05 2.69 7.63 -2.91 -0.02 2.66 15 15 C 0.02 0.94 5.29 84.66 0.45 1.38 15 16 N -0.91 -52.89 10.39 21.45 0.22 -52.67 15 17 Si 0.95 44.85 29.54 68.60 2.03 46.88 15 18 H -0.27 -12.62 7.11 99.48 0.71 -11.91 15 19 H -0.28 -13.02 7.11 99.48 0.71 -12.32 15 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 21 H 0.04 1.65 8.14 -2.38 -0.02 1.63 15 22 H 0.07 2.12 8.14 -2.39 -0.02 2.11 15 23 H 0.05 1.73 8.06 -2.39 -0.02 1.71 15 24 H 0.07 2.32 8.14 -2.39 -0.02 2.30 15 25 H 0.07 2.39 7.84 -2.38 -0.02 2.37 15 26 H 0.19 4.90 8.06 -2.92 -0.02 4.87 15 27 H 0.15 7.85 6.43 -2.91 -0.02 7.83 15 28 H 0.26 14.16 8.31 -92.70 -0.77 13.39 15 Total: -1.00 -66.46 233.06 4.51 -61.94 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.32 Total: 15.10 kcal Atomic # 6 Polarization: -52.59 SS G_CDS: 3.12 Total: -49.47 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -0.96 Total: -74.46 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -66.46 4.51 -61.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944626.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.479 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds