Wall clock time and date at job start Mon Mar 30 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.66460 * 2 1 4 4 C 1.54341 * 110.74513 * 123.39774 * 2 1 3 5 5 C 1.51192 * 105.26918 * 91.70727 * 4 2 1 6 6 C 1.34885 * 143.18558 * 197.21143 * 5 4 2 7 7 N 1.36336 * 108.21598 * 180.02562 * 6 5 4 8 8 H 0.96994 * 125.63335 * 180.02562 * 7 6 5 9 9 C 1.36333 * 108.72718 * 359.97438 * 7 6 5 10 10 C 1.34878 * 108.22227 * 0.02562 * 9 7 6 11 11 C 1.51191 * 143.19134 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.36107 * 43.79676 * 11 10 9 13 13 C 1.50699 * 110.28489 * 281.74029 * 11 10 9 14 14 H 1.08000 * 120.00204 * 244.15776 * 13 11 10 15 15 C 1.37876 * 119.99990 * 64.14786 * 13 11 10 16 16 N 1.31508 * 120.00011 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99959 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47288 * 60.00392 * 17 15 13 19 19 H 1.48500 * 109.47215 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47548 * 300.00310 * 17 15 13 21 21 H 1.09002 * 109.47153 * 183.20212 * 1 2 3 22 22 H 1.09001 * 109.46832 * 63.20403 * 1 2 3 23 23 H 1.09004 * 109.47261 * 303.20385 * 1 2 3 24 24 H 1.08995 * 110.29073 * 210.65958 * 4 2 1 25 25 H 1.09011 * 110.28603 * 332.76442 * 4 2 1 26 26 H 1.07999 * 125.89083 * 0.05091 * 6 5 4 27 27 H 1.07997 * 125.88780 * 180.02562 * 9 7 6 28 28 H 0.97008 * 119.99976 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0767 -0.7945 1.2050 5 6 2.2583 -2.2081 0.7005 6 6 2.4227 -3.4853 1.1021 7 7 2.5241 -4.2712 -0.0072 8 1 2.6476 -5.2333 -0.0088 9 6 2.4220 -3.4816 -1.1139 10 6 2.2579 -2.2058 -0.7081 11 6 2.0759 -0.7905 -1.2077 12 1 1.3600 -0.7674 -2.0292 13 6 3.3978 -0.2191 -1.6517 14 1 3.8221 0.6273 -1.1322 15 6 4.0657 -0.7772 -2.7211 16 7 3.5490 -1.8077 -3.3539 17 14 5.7046 -0.0694 -3.2710 18 1 6.6802 -0.1547 -2.1547 19 1 6.2126 -0.8420 -4.4330 20 1 5.5238 1.3515 -3.6628 21 1 -0.3633 -1.0261 0.0574 22 1 -0.3633 0.4633 -0.9173 23 1 -0.3634 0.5628 0.8599 24 1 3.0329 -0.3824 1.5270 25 1 1.3604 -0.7756 2.0265 26 1 2.4661 -3.8264 2.1259 27 1 2.4651 -3.8193 -2.1388 28 1 4.0187 -2.2000 -4.1065 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260944628.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:49 Heat of formation + Delta-G solvation = 42.873849 kcal Electronic energy + Delta-G solvation = -11929.446346 eV Core-core repulsion = 9945.890535 eV Total energy + Delta-G solvation = -1983.555811 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.21366 -35.97643 -32.34551 -29.47646 -28.40087 -26.45921 -25.41339 -22.90595 -19.96309 -18.31661 -17.65624 -16.59742 -15.80233 -14.41417 -13.85950 -13.35227 -12.79135 -12.47693 -12.28658 -11.81309 -11.64678 -11.12589 -10.97444 -10.62782 -10.42186 -10.04510 -9.81361 -9.73800 -9.24403 -8.92863 -8.25334 -7.14460 -6.74138 -5.85108 -3.89629 3.38738 3.40984 3.42360 3.46244 4.35727 4.38711 4.57899 5.45944 5.69053 5.97703 6.07505 6.14120 6.27765 6.50993 6.65384 6.70589 6.76821 6.81824 7.14258 7.16372 7.49762 7.57732 7.70632 7.97007 8.04770 8.32927 8.51905 8.56341 8.79298 9.13457 9.72477 11.20813 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.035029 B = 0.016238 C = 0.013013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.155730 B = 1723.889097 C = 2151.151670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.023 4.023 5 C -0.206 4.206 6 C -0.036 4.036 7 N -0.577 5.577 8 H 0.401 0.599 9 C -0.004 4.004 10 C -0.105 4.105 11 C 0.115 3.885 12 H 0.028 0.972 13 C -0.500 4.500 14 H 0.054 0.946 15 C 0.065 3.935 16 N -0.883 5.883 17 Si 0.886 3.114 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.278 1.278 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.037 0.963 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.142 0.858 27 H 0.160 0.840 28 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.996 -2.329 5.900 7.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.061 4.061 5 C -0.215 4.215 6 C -0.165 4.165 7 N -0.175 5.175 8 H 0.236 0.764 9 C -0.131 4.131 10 C -0.111 4.111 11 C 0.096 3.904 12 H 0.046 0.954 13 C -0.538 4.538 14 H 0.072 0.928 15 C -0.137 4.137 16 N -0.522 5.522 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.204 1.204 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.160 0.840 27 H 0.177 0.823 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.944 -2.583 5.725 6.936 hybrid contribution 1.262 -0.289 -0.346 1.340 sum -1.682 -2.871 5.379 6.325 Atomic orbital electron populations 1.21744 0.96756 1.00758 0.99875 1.21947 0.93551 0.98874 0.96645 0.91446 1.20259 0.98920 0.90495 0.96448 1.20396 1.10226 0.93438 0.97432 1.20418 1.15143 0.90480 0.90420 1.41863 1.61214 1.08400 1.05984 0.76430 1.21061 1.11148 0.90684 0.90210 1.20639 1.02591 0.94896 0.93023 1.17735 0.95509 0.85990 0.91188 0.95435 1.21094 1.05093 1.14174 1.13487 0.92776 1.24903 0.97285 0.94960 0.96504 1.69942 1.38446 1.22659 1.21127 0.86762 0.84744 0.79097 0.77944 1.20555 1.21506 1.20370 0.93265 0.93299 0.94353 0.92372 0.93854 0.84036 0.82302 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.09 37.16 0.34 -2.16 15 2 C -0.09 -1.99 3.15 -89.23 -0.28 -2.27 15 3 H 0.07 1.45 7.75 -51.93 -0.40 1.04 15 4 C -0.02 -0.49 6.28 -26.94 -0.17 -0.65 15 5 C -0.21 -4.66 6.91 -104.58 -0.72 -5.39 15 6 C -0.04 -0.70 11.94 -16.74 -0.20 -0.90 15 7 N -0.58 -11.07 6.07 -12.84 -0.08 -11.15 15 8 H 0.40 5.96 8.96 -40.82 -0.37 5.59 15 9 C 0.00 -0.09 11.18 -16.74 -0.19 -0.28 15 10 C -0.11 -2.66 5.55 -104.58 -0.58 -3.24 15 11 C 0.11 2.99 2.30 -91.99 -0.21 2.78 15 12 H 0.03 0.78 7.91 -51.93 -0.41 0.37 15 13 C -0.50 -14.13 8.49 -34.44 -0.29 -14.43 15 14 H 0.05 1.51 7.59 -52.49 -0.40 1.11 15 15 C 0.06 1.84 5.33 -17.82 -0.10 1.74 15 16 N -0.88 -25.35 11.55 55.43 0.64 -24.71 15 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 15 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 21 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.04 0.78 7.91 -51.92 -0.41 0.37 15 26 H 0.14 2.26 8.06 -52.49 -0.42 1.84 15 27 H 0.16 3.81 7.59 -52.49 -0.40 3.41 15 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 LS Contribution 235.37 15.07 3.55 3.55 Total: -1.00 -30.46 235.37 -6.95 -37.41 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.64 Total: 2.89 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -2.40 Total: -24.80 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.56 Total: -35.86 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.46 -6.95 -37.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944628.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.283 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds