Wall clock time and date at job start Mon Mar 30 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.66460 * 2 1 4 4 C 1.54341 * 110.74513 * 123.39774 * 2 1 3 5 5 C 1.51192 * 105.26918 * 91.70727 * 4 2 1 6 6 C 1.34885 * 143.18558 * 197.21143 * 5 4 2 7 7 N 1.36336 * 108.21598 * 180.02562 * 6 5 4 8 8 H 0.96994 * 125.63335 * 180.02562 * 7 6 5 9 9 C 1.36333 * 108.72718 * 359.97438 * 7 6 5 10 10 C 1.34878 * 108.22227 * 0.02562 * 9 7 6 11 11 C 1.51191 * 143.19134 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.36107 * 43.79676 * 11 10 9 13 13 C 1.50699 * 110.28489 * 281.74029 * 11 10 9 14 14 H 1.08000 * 120.00204 * 244.15776 * 13 11 10 15 15 C 1.37876 * 119.99990 * 64.14786 * 13 11 10 16 16 N 1.31508 * 120.00011 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99959 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47288 * 60.00392 * 17 15 13 19 19 H 1.48500 * 109.47215 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47548 * 300.00310 * 17 15 13 21 21 H 1.09002 * 109.47153 * 183.20212 * 1 2 3 22 22 H 1.09001 * 109.46832 * 63.20403 * 1 2 3 23 23 H 1.09004 * 109.47261 * 303.20385 * 1 2 3 24 24 H 1.08995 * 110.29073 * 210.65958 * 4 2 1 25 25 H 1.09011 * 110.28603 * 332.76442 * 4 2 1 26 26 H 1.07999 * 125.89083 * 0.05091 * 6 5 4 27 27 H 1.07997 * 125.88780 * 180.02562 * 9 7 6 28 28 H 0.97008 * 119.99976 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0767 -0.7945 1.2050 5 6 2.2583 -2.2081 0.7005 6 6 2.4227 -3.4853 1.1021 7 7 2.5241 -4.2712 -0.0072 8 1 2.6476 -5.2333 -0.0088 9 6 2.4220 -3.4816 -1.1139 10 6 2.2579 -2.2058 -0.7081 11 6 2.0759 -0.7905 -1.2077 12 1 1.3600 -0.7674 -2.0292 13 6 3.3978 -0.2191 -1.6517 14 1 3.8221 0.6273 -1.1322 15 6 4.0657 -0.7772 -2.7211 16 7 3.5490 -1.8077 -3.3539 17 14 5.7046 -0.0694 -3.2710 18 1 6.6802 -0.1547 -2.1547 19 1 6.2126 -0.8420 -4.4330 20 1 5.5238 1.3515 -3.6628 21 1 -0.3633 -1.0261 0.0574 22 1 -0.3633 0.4633 -0.9173 23 1 -0.3634 0.5628 0.8599 24 1 3.0329 -0.3824 1.5270 25 1 1.3604 -0.7756 2.0265 26 1 2.4661 -3.8264 2.1259 27 1 2.4651 -3.8193 -2.1388 28 1 4.0187 -2.2000 -4.1065 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260944628.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:49 Heat of formation + Delta-G solvation = 24.738107 kcal Electronic energy + Delta-G solvation = -11930.232771 eV Core-core repulsion = 9945.890535 eV Total energy + Delta-G solvation = -1984.342235 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.89806 -37.70257 -34.43206 -31.10168 -30.23678 -28.34531 -27.00631 -24.89835 -21.64359 -20.08268 -19.39413 -18.42717 -17.69229 -16.44711 -15.57519 -15.06450 -14.51045 -14.13406 -14.04269 -13.51722 -13.33044 -13.01887 -12.89585 -12.36791 -12.31595 -11.83883 -11.63338 -11.41900 -11.18561 -10.79015 -10.39246 -8.82579 -8.53343 -7.96307 -6.10326 1.41017 1.42730 1.49254 1.76696 2.44175 2.60897 2.85679 3.30020 4.01254 4.37928 4.52547 4.64151 4.75377 4.83621 5.03499 5.08875 5.14147 5.25428 5.41339 5.50026 5.66872 5.78235 5.88528 6.01793 6.11578 6.45236 6.52915 6.77327 7.02228 7.25231 7.54232 9.05710 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.035029 B = 0.016238 C = 0.013013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.155730 B = 1723.889097 C = 2151.151670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.091 4.091 3 H 0.063 0.937 4 C -0.017 4.017 5 C -0.237 4.237 6 C -0.009 4.009 7 N -0.558 5.558 8 H 0.424 0.576 9 C -0.024 4.024 10 C -0.144 4.144 11 C 0.106 3.894 12 H -0.014 1.014 13 C -0.522 4.522 14 H 0.049 0.951 15 C 0.017 3.983 16 N -0.905 5.905 17 Si 0.947 3.053 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.271 1.271 21 H 0.041 0.959 22 H 0.043 0.957 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.191 0.809 27 H 0.143 0.857 28 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 -2.732 7.745 8.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.110 4.110 3 H 0.081 0.919 4 C -0.055 4.055 5 C -0.245 4.245 6 C -0.139 4.139 7 N -0.157 5.157 8 H 0.262 0.738 9 C -0.152 4.152 10 C -0.150 4.150 11 C 0.087 3.913 12 H 0.004 0.996 13 C -0.560 4.560 14 H 0.067 0.933 15 C -0.182 4.182 16 N -0.543 5.543 17 Si 0.773 3.227 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.208 0.792 27 H 0.161 0.839 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.683 -3.008 7.572 8.578 hybrid contribution 1.152 -0.204 -0.932 1.496 sum -1.531 -3.212 6.640 7.534 Atomic orbital electron populations 1.21647 0.94466 1.00851 1.01230 1.21921 0.95538 0.98119 0.95412 0.91881 1.20202 0.99390 0.89299 0.96573 1.20757 1.12275 0.95326 0.96139 1.21111 1.11265 0.89411 0.92115 1.41773 1.59707 1.09450 1.04761 0.73791 1.20879 1.12418 0.91144 0.90797 1.20736 1.04368 0.94866 0.95049 1.17744 0.93756 0.88032 0.91724 0.99569 1.21433 1.06306 1.14289 1.13962 0.93285 1.25641 1.00495 0.95409 0.96703 1.70077 1.39510 1.23459 1.21280 0.85802 0.80740 0.78698 0.77462 1.20419 1.21027 1.19588 0.93978 0.93755 0.90917 0.92952 0.90668 0.79215 0.83907 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 9.09 71.98 0.65 -3.86 15 2 C -0.09 -3.95 3.15 -9.89 -0.03 -3.98 15 3 H 0.06 2.71 7.75 -2.38 -0.02 2.69 15 4 C -0.02 -0.67 6.28 30.46 0.19 -0.48 15 5 C -0.24 -10.28 6.91 -19.84 -0.14 -10.42 15 6 C -0.01 -0.32 11.94 83.22 0.99 0.68 15 7 N -0.56 -20.16 6.07 -194.53 -1.18 -21.34 15 8 H 0.42 11.35 8.96 -92.71 -0.83 10.52 15 9 C -0.02 -1.12 11.18 83.22 0.93 -0.19 15 10 C -0.14 -7.30 5.55 -19.84 -0.11 -7.41 15 11 C 0.11 5.71 2.30 -11.68 -0.03 5.69 15 12 H -0.01 -0.82 7.91 -2.39 -0.02 -0.84 15 13 C -0.52 -30.20 8.49 25.60 0.22 -29.98 15 14 H 0.05 2.79 7.59 -2.91 -0.02 2.77 15 15 C 0.02 0.97 5.33 84.66 0.45 1.42 15 16 N -0.90 -53.33 11.55 21.45 0.25 -53.08 15 17 Si 0.95 45.32 29.54 68.60 2.03 47.35 15 18 H -0.28 -13.19 7.11 99.48 0.71 -12.49 15 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 15 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 15 21 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.07 2.11 8.14 -2.38 -0.02 2.09 15 24 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 25 H 0.07 2.46 7.91 -2.38 -0.02 2.44 15 26 H 0.19 4.94 8.06 -2.91 -0.02 4.92 15 27 H 0.14 7.09 7.59 -2.91 -0.02 7.07 15 28 H 0.26 14.40 8.31 -92.70 -0.77 13.63 15 Total: -1.00 -66.57 235.37 4.54 -62.03 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.32 Total: 13.58 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 3.13 Total: -48.54 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -0.93 Total: -74.42 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -66.57 4.54 -62.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944628.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.765 kcal (2) G-P(sol) polarization free energy of solvation -66.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds