Wall clock time and date at job start Mon Mar 30 2020 02:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34450 * 125.79005 * 2 1 4 4 C 1.41507 * 106.80588 * 179.97438 * 3 2 1 5 5 C 1.34285 * 107.02160 * 0.02562 * 4 3 2 6 6 O 1.34200 * 125.78651 * 179.74354 * 2 1 3 7 7 C 1.51447 * 110.25312 * 179.97438 * 5 4 3 8 8 C 1.54450 * 104.99702 * 16.88072 * 7 5 4 9 9 C 1.51193 * 142.39576 * 180.02562 * 4 3 2 10 10 H 1.08994 * 110.35090 * 44.30398 * 9 4 3 11 11 C 1.50700 * 110.44416 * 282.06684 * 9 4 3 12 12 H 1.07999 * 119.99959 * 278.33731 * 11 9 4 13 13 C 1.37879 * 119.99778 * 98.33173 * 11 9 4 14 14 N 1.31516 * 119.99714 * 180.88104 * 13 11 9 15 15 Si 1.86800 * 119.99858 * 0.88290 * 13 11 9 16 16 H 1.48497 * 109.47344 * 84.86244 * 15 13 11 17 17 H 1.48503 * 109.47083 * 204.86282 * 15 13 11 18 18 H 1.48502 * 109.47221 * 324.85921 * 15 13 11 19 19 H 1.09006 * 109.46728 * 90.00302 * 1 2 3 20 20 H 1.08999 * 109.47394 * 210.00057 * 1 2 3 21 21 H 1.09001 * 109.47116 * 330.00988 * 1 2 3 22 22 H 1.08006 * 126.59493 * 0.02823 * 3 2 1 23 23 H 1.09002 * 110.33290 * 135.75795 * 7 5 4 24 24 H 1.09002 * 110.33737 * 257.99348 * 7 5 4 25 25 H 1.08989 * 110.95093 * 92.57212 * 8 7 5 26 26 H 1.08997 * 110.94350 * 216.25201 * 8 7 5 27 27 H 0.96999 * 119.99326 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0906 0.0000 4 6 3.6314 0.6303 0.0006 5 6 3.5854 -0.7118 0.0004 6 8 2.2917 -1.0886 0.0049 7 6 4.9874 -1.2844 0.0004 8 6 5.8972 -0.1139 0.4338 9 6 5.0641 1.1130 0.0014 10 1 5.1895 1.9270 0.7154 11 6 5.4694 1.5611 -1.3792 12 1 5.7801 0.8329 -2.1137 13 6 5.4434 2.9007 -1.7045 14 7 5.7805 3.2901 -2.9147 15 14 4.9295 4.1624 -0.4265 16 1 6.1030 4.5303 0.4057 17 1 4.4073 5.3736 -1.1088 18 1 3.8695 3.5864 0.4395 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3633 0.8901 0.5137 22 1 1.9664 2.1200 0.0004 23 1 5.0612 -2.1056 0.7133 24 1 5.2578 -1.6243 -0.9994 25 1 6.0516 -0.1193 1.5127 26 1 6.8500 -0.1448 -0.0945 27 1 5.7625 4.2325 -3.1434 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260948098.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:58 Heat of formation + Delta-G solvation = 18.101378 kcal Electronic energy + Delta-G solvation = -11835.075615 eV Core-core repulsion = 9752.726928 eV Total energy + Delta-G solvation = -2082.348688 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.85292 -36.53664 -32.41657 -32.18242 -29.73119 -28.16538 -25.12653 -23.48212 -20.85688 -19.57124 -18.35190 -17.04527 -15.64715 -15.49406 -14.17236 -13.74520 -13.51453 -13.04688 -12.65358 -12.52592 -12.22479 -11.89610 -11.43392 -11.07524 -10.77853 -10.71657 -10.46983 -9.88859 -9.69514 -9.39573 -8.57281 -8.50191 -7.23349 -6.08981 -4.08179 2.47394 3.27868 3.31259 3.37051 3.42751 3.59652 4.42901 5.10372 5.23386 5.45465 5.59743 5.70065 5.79066 5.84875 5.94733 6.07540 6.28621 6.32596 6.60078 6.66409 6.89364 6.92314 7.10257 7.25211 7.46176 7.73472 8.06309 8.49681 8.95028 9.53849 11.03868 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.036006 B = 0.015227 C = 0.012308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.469318 B = 1838.385408 C = 2274.475694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.042 4.042 3 C -0.185 4.185 4 C -0.145 4.145 5 C -0.085 4.085 6 O -0.174 6.174 7 C -0.007 4.007 8 C -0.109 4.109 9 C 0.069 3.931 10 H 0.039 0.961 11 C -0.501 4.501 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.899 5.899 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.290 1.290 18 H -0.261 1.261 19 H 0.073 0.927 20 H 0.068 0.932 21 H 0.081 0.919 22 H 0.134 0.866 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 -5.357 7.108 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.091 4.091 3 C -0.204 4.204 4 C -0.147 4.147 5 C -0.134 4.134 6 O -0.072 6.072 7 C -0.044 4.044 8 C -0.146 4.146 9 C 0.050 3.950 10 H 0.057 0.943 11 C -0.538 4.538 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.536 5.536 15 Si 0.703 3.297 16 H -0.201 1.201 17 H -0.216 1.216 18 H -0.186 1.186 19 H 0.092 0.908 20 H 0.087 0.913 21 H 0.100 0.900 22 H 0.152 0.848 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.129 -5.482 6.978 10.785 hybrid contribution -0.435 1.022 0.351 1.165 sum -6.564 -4.459 7.330 10.803 Atomic orbital electron populations 1.20133 0.85795 1.03043 1.02809 1.22141 0.93284 0.84154 1.09551 1.20962 0.92297 0.98555 1.08598 1.22009 0.96872 0.94674 1.01113 1.23008 0.84031 0.95733 1.10643 1.83639 1.15590 1.34569 1.73407 1.20535 0.84125 0.98004 1.01756 1.22473 0.98558 0.94376 0.99217 1.18300 0.85212 0.93753 0.97742 0.94306 1.20867 1.43887 0.93221 0.95834 0.90681 1.25056 0.94187 0.98458 0.95183 1.69901 1.48290 1.16292 1.19137 0.86864 0.79841 0.80887 0.82143 1.20084 1.21591 1.18567 0.90788 0.91315 0.90009 0.84795 0.91992 0.90217 0.92597 0.89741 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 10.42 36.00 0.37 -0.45 15 2 C -0.04 -0.81 7.32 -35.65 -0.26 -1.07 15 3 C -0.18 -4.08 10.81 -39.68 -0.43 -4.51 15 4 C -0.14 -3.47 6.26 -104.53 -0.65 -4.12 15 5 C -0.09 -1.88 8.21 -35.34 -0.29 -2.17 15 6 O -0.17 -3.67 10.66 4.77 0.05 -3.61 15 7 C -0.01 -0.13 6.78 -26.76 -0.18 -0.31 15 8 C -0.11 -2.15 6.65 -25.19 -0.17 -2.32 15 9 C 0.07 1.68 2.44 -91.91 -0.22 1.45 15 10 H 0.04 0.95 5.49 -51.93 -0.28 0.66 15 11 C -0.50 -14.20 8.82 -34.44 -0.30 -14.51 15 12 H 0.08 2.30 8.06 -52.49 -0.42 1.87 15 13 C 0.07 2.13 5.47 -17.82 -0.10 2.03 15 14 N -0.90 -27.64 13.96 55.43 0.77 -26.86 15 15 Si 0.88 21.81 26.91 -169.99 -4.57 17.24 15 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 18 H -0.26 -6.33 6.95 56.52 0.39 -5.93 15 19 H 0.07 0.91 8.14 -51.93 -0.42 0.48 15 20 H 0.07 0.80 8.14 -51.93 -0.42 0.37 15 21 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.13 2.81 8.06 -52.48 -0.42 2.39 15 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.08 1.47 8.14 -51.93 -0.42 1.05 15 25 H 0.06 0.96 8.14 -51.94 -0.42 0.54 15 26 H 0.08 1.63 7.89 -51.93 -0.41 1.22 15 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 LS Contribution 232.53 15.07 3.50 3.50 Total: -1.00 -32.04 232.53 -5.70 -37.74 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -3.22 Total: -2.03 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -2.23 Total: -25.98 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.77 Total: -26.86 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: 0.05 Total: -3.61 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.57 Total: 17.24 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -32.04 -5.70 -37.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260948098.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.842 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds