Wall clock time and date at job start Mon Mar 30 2020 02:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34450 * 125.79005 * 2 1 4 4 C 1.41507 * 106.80588 * 179.97438 * 3 2 1 5 5 C 1.34285 * 107.02160 * 0.02562 * 4 3 2 6 6 O 1.34200 * 125.78651 * 179.74354 * 2 1 3 7 7 C 1.51447 * 110.25312 * 179.97438 * 5 4 3 8 8 C 1.54450 * 104.99702 * 16.88072 * 7 5 4 9 9 C 1.51193 * 142.39576 * 180.02562 * 4 3 2 10 10 H 1.08994 * 110.35090 * 44.30398 * 9 4 3 11 11 C 1.50700 * 110.44416 * 282.06684 * 9 4 3 12 12 H 1.07999 * 119.99959 * 278.33731 * 11 9 4 13 13 C 1.37879 * 119.99778 * 98.33173 * 11 9 4 14 14 N 1.31516 * 119.99714 * 180.88104 * 13 11 9 15 15 Si 1.86800 * 119.99858 * 0.88290 * 13 11 9 16 16 H 1.48497 * 109.47344 * 84.86244 * 15 13 11 17 17 H 1.48503 * 109.47083 * 204.86282 * 15 13 11 18 18 H 1.48502 * 109.47221 * 324.85921 * 15 13 11 19 19 H 1.09006 * 109.46728 * 90.00302 * 1 2 3 20 20 H 1.08999 * 109.47394 * 210.00057 * 1 2 3 21 21 H 1.09001 * 109.47116 * 330.00988 * 1 2 3 22 22 H 1.08006 * 126.59493 * 0.02823 * 3 2 1 23 23 H 1.09002 * 110.33290 * 135.75795 * 7 5 4 24 24 H 1.09002 * 110.33737 * 257.99348 * 7 5 4 25 25 H 1.08989 * 110.95093 * 92.57212 * 8 7 5 26 26 H 1.08997 * 110.94350 * 216.25201 * 8 7 5 27 27 H 0.96999 * 119.99326 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0906 0.0000 4 6 3.6314 0.6303 0.0006 5 6 3.5854 -0.7118 0.0004 6 8 2.2917 -1.0886 0.0049 7 6 4.9874 -1.2844 0.0004 8 6 5.8972 -0.1139 0.4338 9 6 5.0641 1.1130 0.0014 10 1 5.1895 1.9270 0.7154 11 6 5.4694 1.5611 -1.3792 12 1 5.7801 0.8329 -2.1137 13 6 5.4434 2.9007 -1.7045 14 7 5.7805 3.2901 -2.9147 15 14 4.9295 4.1624 -0.4265 16 1 6.1030 4.5303 0.4057 17 1 4.4073 5.3736 -1.1088 18 1 3.8695 3.5864 0.4395 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3633 0.8901 0.5137 22 1 1.9664 2.1200 0.0004 23 1 5.0612 -2.1056 0.7133 24 1 5.2578 -1.6243 -0.9994 25 1 6.0516 -0.1193 1.5127 26 1 6.8500 -0.1448 -0.0945 27 1 5.7625 4.2325 -3.1434 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260948098.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:58 Heat of formation + Delta-G solvation = -2.069472 kcal Electronic energy + Delta-G solvation = -11835.950289 eV Core-core repulsion = 9752.726928 eV Total energy + Delta-G solvation = -2083.223361 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.48090 -38.23934 -34.50814 -33.73865 -31.14539 -30.07177 -26.63693 -25.40208 -22.44994 -21.27902 -20.07998 -19.09443 -17.34723 -17.11838 -16.13184 -15.40766 -15.02409 -14.65017 -14.40812 -13.80176 -13.72712 -13.47135 -13.06823 -12.88378 -12.53324 -12.34284 -12.13461 -11.81962 -11.61405 -11.29247 -10.76715 -10.23793 -8.86753 -8.31990 -6.35235 0.89341 1.30759 1.33351 1.46320 1.77850 1.86229 2.33539 3.05893 3.68324 3.98715 4.25231 4.28241 4.33479 4.55845 4.70354 4.72299 4.77581 4.93687 4.96550 5.09943 5.18200 5.37968 5.45425 5.51444 5.66325 5.80626 6.26732 6.41886 6.70285 7.30326 8.84572 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.036006 B = 0.015227 C = 0.012308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.469318 B = 1838.385408 C = 2274.475694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.023 4.023 3 C -0.226 4.226 4 C -0.186 4.186 5 C -0.091 4.091 6 O -0.177 6.177 7 C -0.004 4.004 8 C -0.104 4.104 9 C 0.061 3.939 10 H 0.036 0.964 11 C -0.502 4.502 12 H 0.035 0.965 13 C 0.014 3.986 14 N -0.948 5.948 15 Si 0.941 3.059 16 H -0.260 1.260 17 H -0.288 1.288 18 H -0.252 1.252 19 H 0.090 0.910 20 H 0.092 0.908 21 H 0.104 0.896 22 H 0.137 0.863 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 -6.061 9.010 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.072 4.072 3 C -0.245 4.245 4 C -0.188 4.188 5 C -0.140 4.140 6 O -0.075 6.075 7 C -0.041 4.041 8 C -0.141 4.141 9 C 0.041 3.959 10 H 0.054 0.946 11 C -0.540 4.540 12 H 0.054 0.946 13 C -0.183 4.183 14 N -0.588 5.588 15 Si 0.765 3.235 16 H -0.185 1.185 17 H -0.214 1.214 18 H -0.176 1.176 19 H 0.108 0.892 20 H 0.111 0.889 21 H 0.122 0.878 22 H 0.154 0.846 23 H 0.121 0.879 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.495 -6.206 8.896 13.184 hybrid contribution -0.057 1.164 -0.287 1.200 sum -7.553 -5.043 8.608 12.513 Atomic orbital electron populations 1.20433 0.81381 1.05378 1.04523 1.23150 0.95487 0.82812 1.05791 1.21221 0.92350 0.99703 1.11275 1.22151 0.97112 0.96028 1.03499 1.23525 0.85161 0.95546 1.09801 1.83672 1.15428 1.35241 1.73194 1.20625 0.82043 0.98667 1.02793 1.22453 0.97937 0.92563 1.01153 1.18332 0.86787 0.95678 0.95054 0.94579 1.21107 1.43044 0.92595 0.97217 0.94648 1.25922 0.94458 1.00765 0.97182 1.70046 1.50540 1.16834 1.21419 0.85821 0.80121 0.77966 0.79633 1.18476 1.21447 1.17576 0.89188 0.88900 0.87767 0.84555 0.87895 0.90524 0.89425 0.89879 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.41 10.42 71.23 0.74 -0.66 15 2 C -0.02 -0.83 7.32 24.82 0.18 -0.65 15 3 C -0.23 -9.77 10.81 22.21 0.24 -9.53 15 4 C -0.19 -8.79 6.26 -19.81 -0.12 -8.92 15 5 C -0.09 -3.89 8.21 25.02 0.21 -3.69 15 6 O -0.18 -7.10 10.66 -5.83 -0.06 -7.16 15 7 C 0.00 -0.15 6.78 30.58 0.21 0.05 15 8 C -0.10 -3.94 6.65 31.59 0.21 -3.73 15 9 C 0.06 2.93 2.44 -11.63 -0.03 2.90 15 10 H 0.04 1.73 5.49 -2.39 -0.01 1.72 15 11 C -0.50 -29.24 8.82 25.60 0.23 -29.02 15 12 H 0.04 2.27 8.06 -2.91 -0.02 2.24 15 13 C 0.01 0.82 5.47 84.65 0.46 1.29 15 14 N -0.95 -60.20 13.96 21.45 0.30 -59.90 15 15 Si 0.94 45.47 26.91 68.60 1.85 47.31 15 16 H -0.26 -11.83 7.11 99.48 0.71 -11.12 15 17 H -0.29 -13.73 7.11 99.48 0.71 -13.03 15 18 H -0.25 -11.68 6.95 99.48 0.69 -10.99 15 19 H 0.09 1.86 8.14 -2.38 -0.02 1.84 15 20 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.10 1.97 8.14 -2.39 -0.02 1.95 15 22 H 0.14 5.63 8.06 -2.91 -0.02 5.61 15 23 H 0.10 2.83 8.14 -2.39 -0.02 2.81 15 24 H 0.08 2.76 8.14 -2.39 -0.02 2.74 15 25 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 26 H 0.08 3.14 7.89 -2.39 -0.02 3.12 15 27 H 0.27 15.79 8.31 -92.71 -0.77 15.02 15 Total: -1.00 -70.88 232.53 5.55 -65.33 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.14 Total: 6.37 kcal Atomic # 6 Polarization: -54.28 SS G_CDS: 2.32 Total: -51.96 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.30 Total: -59.90 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.06 Total: -7.16 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.85 Total: 47.31 kcal Total: -70.88 5.55 -65.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260948098.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.263 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds