Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46892 * 2 1 4 4 C 1.50697 * 109.47194 * 119.99489 * 2 1 3 5 5 H 1.08009 * 120.00082 * 119.99848 * 4 2 1 6 6 C 1.37879 * 120.00402 * 300.00274 * 4 2 1 7 7 N 1.31517 * 119.99551 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00341 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46749 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47085 * 120.00109 * 8 6 4 11 11 H 1.48501 * 109.47166 * 240.00294 * 8 6 4 12 12 N 1.46492 * 109.47238 * 239.99713 * 2 1 3 13 13 N 1.28524 * 124.43993 * 300.02534 * 12 2 1 14 14 C 1.31145 * 109.06116 * 179.73377 * 13 12 2 15 15 C 1.40977 * 105.76817 * 0.02562 * 14 13 12 16 16 C 1.43199 * 127.24067 * 180.02562 * 15 14 13 17 17 N 5.95698 * 118.88882 * 261.93478 * 2 1 3 18 18 N 1.28586 * 124.43802 * 119.72395 * 12 2 1 19 19 H 1.09004 * 109.47061 * 299.99925 * 1 2 3 20 20 H 1.08995 * 109.47188 * 60.00499 * 1 2 3 21 21 H 1.09006 * 109.47083 * 180.02562 * 1 2 3 22 22 H 0.97001 * 119.99574 * 180.02562 * 7 6 4 23 23 H 1.08007 * 127.11706 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3214 -1.1201 4.0081 9 1 3.1455 -2.2874 3.6039 10 1 3.1466 -0.1871 4.8166 11 1 1.1661 -1.5865 4.8162 12 7 2.0184 -0.6906 -1.1961 13 7 1.7606 -1.9164 -1.4837 14 6 2.3415 -2.2211 -2.6193 15 6 3.0072 -1.0502 -3.0354 16 6 3.7887 -0.8728 -4.2222 17 7 4.4079 -0.7318 -5.1641 18 7 2.7565 -0.1482 -2.0985 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 0.7087 1.1614 3.4844 23 1 2.3160 -3.1726 -3.1298 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260962120.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = 132.471671 kcal Electronic energy + Delta-G solvation = -11189.247800 eV Core-core repulsion = 9040.610988 eV Total energy + Delta-G solvation = -2148.636812 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.071 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.06036 -36.45011 -34.97155 -32.19884 -32.07405 -29.44412 -25.59882 -24.09899 -23.11830 -20.30117 -18.37592 -16.90178 -16.24165 -15.67078 -14.80487 -13.84698 -13.30930 -13.29596 -13.05853 -12.87603 -11.99835 -11.35710 -11.17215 -11.11446 -11.04225 -10.63766 -10.42811 -10.32572 -9.86711 -9.61442 -8.79149 -8.64149 -6.42107 -4.51521 1.76023 2.58937 2.65684 3.07558 3.13753 3.22197 3.29061 3.70634 4.05019 4.17478 4.90169 5.07334 5.33308 6.20050 6.29887 6.39393 6.46274 6.54736 7.00131 7.31652 7.41249 7.57845 7.61881 7.74902 8.51872 8.86839 9.15908 10.64371 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.062298 B = 0.009472 C = 0.009050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.343501 B = 2955.424935 C = 3093.264951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.279 3.721 3 H 0.081 0.919 4 C -0.533 4.533 5 H 0.072 0.928 6 C 0.071 3.929 7 N -0.886 5.886 8 Si 0.914 3.086 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.279 1.279 12 N -0.081 5.081 13 N -0.264 5.264 14 C 0.000 4.000 15 C 0.017 3.983 16 C 0.322 3.678 17 N -0.418 5.418 18 N -0.244 5.244 19 H 0.111 0.889 20 H 0.021 0.979 21 H 0.051 0.949 22 H 0.270 0.730 23 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -3.456 -3.894 5.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.183 3.817 3 H 0.099 0.901 4 C -0.572 4.572 5 H 0.090 0.910 6 C -0.133 4.133 7 N -0.523 5.523 8 Si 0.741 3.259 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.204 1.204 12 N 0.012 4.988 13 N -0.104 5.104 14 C -0.184 4.184 15 C -0.143 4.143 16 C 0.004 3.996 17 N -0.097 5.097 18 N -0.093 5.093 19 H 0.129 0.871 20 H 0.040 0.960 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.018 -2.464 -4.039 4.731 hybrid contribution 0.364 -0.852 0.443 1.027 sum 0.382 -3.316 -3.595 4.906 Atomic orbital electron populations 1.22169 0.94873 1.01786 1.02106 1.19974 0.93065 0.93215 0.75452 0.90135 1.21139 1.33505 1.13771 0.88742 0.91003 1.24857 0.94404 0.94890 0.99193 1.69843 1.35412 1.22273 1.24760 0.86164 0.78773 0.79551 0.81438 1.19451 1.20581 1.20448 1.49487 1.28139 1.04572 1.16628 1.74053 1.20997 1.00747 1.14558 1.24755 0.99724 0.99783 0.94175 1.17842 1.07671 0.94236 0.94534 1.23555 0.91872 0.93189 0.90950 1.81231 1.10043 1.07405 1.11062 1.74466 1.10047 1.25827 0.98917 0.87087 0.96014 0.93009 0.91976 0.78475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.13 37.16 0.34 -2.94 14 2 C 0.28 6.50 3.17 -69.09 -0.22 6.29 14 3 H 0.08 1.97 8.14 -51.93 -0.42 1.55 14 4 C -0.53 -13.46 8.67 -34.44 -0.30 -13.76 14 5 H 0.07 1.87 7.81 -52.48 -0.41 1.46 14 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 14 7 N -0.89 -22.50 11.32 55.43 0.63 -21.88 14 8 Si 0.91 19.74 29.54 -169.99 -5.02 14.72 14 9 H -0.27 -5.87 7.11 56.52 0.40 -5.47 14 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 14 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 14 12 N -0.08 -1.76 3.69 -5.89 -0.02 -1.78 14 13 N -0.26 -5.29 11.62 30.91 0.36 -4.93 14 14 C 0.00 0.00 12.19 -16.81 -0.20 -0.21 14 15 C 0.02 0.29 7.09 -84.64 -0.60 -0.31 14 16 C 0.32 5.27 15.95 -22.47 -0.36 4.91 14 17 N -0.42 -7.10 18.54 41.84 0.78 -6.33 14 18 N -0.24 -5.01 12.10 32.40 0.39 -4.62 14 19 H 0.11 2.58 6.07 -51.93 -0.32 2.26 14 20 H 0.02 0.42 8.14 -51.93 -0.42 0.00 14 21 H 0.05 1.11 8.13 -51.93 -0.42 0.69 14 22 H 0.27 6.50 8.31 -40.82 -0.34 6.16 14 23 H 0.20 2.23 8.06 -52.48 -0.42 1.80 14 LS Contribution 224.28 15.07 3.38 3.38 Total: -1.00 -25.99 224.28 -2.49 -28.49 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -1.55 Total: -2.70 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -1.44 Total: -4.35 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 2.13 Total: -39.53 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -25.99 -2.49 -28.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962120.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.959 kcal (2) G-P(sol) polarization free energy of solvation -25.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds