Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46892 * 2 1 4 4 C 1.50697 * 109.47194 * 119.99489 * 2 1 3 5 5 H 1.08009 * 120.00082 * 119.99848 * 4 2 1 6 6 C 1.37879 * 120.00402 * 300.00274 * 4 2 1 7 7 N 1.31517 * 119.99551 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00341 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46749 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47085 * 120.00109 * 8 6 4 11 11 H 1.48501 * 109.47166 * 240.00294 * 8 6 4 12 12 N 1.46492 * 109.47238 * 239.99713 * 2 1 3 13 13 N 1.28524 * 124.43993 * 300.02534 * 12 2 1 14 14 C 1.31145 * 109.06116 * 179.73377 * 13 12 2 15 15 C 1.40977 * 105.76817 * 0.02562 * 14 13 12 16 16 C 1.43199 * 127.24067 * 180.02562 * 15 14 13 17 17 N 5.95698 * 118.88882 * 261.93478 * 2 1 3 18 18 N 1.28586 * 124.43802 * 119.72395 * 12 2 1 19 19 H 1.09004 * 109.47061 * 299.99925 * 1 2 3 20 20 H 1.08995 * 109.47188 * 60.00499 * 1 2 3 21 21 H 1.09006 * 109.47083 * 180.02562 * 1 2 3 22 22 H 0.97001 * 119.99574 * 180.02562 * 7 6 4 23 23 H 1.08007 * 127.11706 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3214 -1.1201 4.0081 9 1 3.1455 -2.2874 3.6039 10 1 3.1466 -0.1871 4.8166 11 1 1.1661 -1.5865 4.8162 12 7 2.0184 -0.6906 -1.1961 13 7 1.7606 -1.9164 -1.4837 14 6 2.3415 -2.2211 -2.6193 15 6 3.0072 -1.0502 -3.0354 16 6 3.7887 -0.8728 -4.2222 17 7 4.4079 -0.7318 -5.1641 18 7 2.7565 -0.1482 -2.0985 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 0.7087 1.1614 3.4844 23 1 2.3160 -3.1726 -3.1298 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260962120.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = 116.210220 kcal Electronic energy + Delta-G solvation = -11189.952949 eV Core-core repulsion = 9040.610988 eV Total energy + Delta-G solvation = -2149.341961 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.071 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.56031 -37.83979 -36.70763 -33.94085 -33.57732 -31.09821 -27.47336 -25.66283 -24.61204 -21.97473 -19.85875 -18.65662 -17.89947 -17.27778 -16.47298 -15.36652 -14.83478 -14.70436 -14.57411 -14.35503 -13.75703 -13.12659 -12.92156 -12.81392 -12.57012 -12.39089 -12.18440 -11.85757 -11.44676 -11.35164 -10.66823 -10.19733 -8.31112 -6.47135 0.32599 1.16742 1.22700 1.43187 1.46520 1.55246 1.62487 2.35367 2.38177 2.64966 3.00668 3.63528 4.05527 4.52446 4.66746 4.77219 4.92527 5.01205 5.27342 5.55500 5.58684 5.76507 5.94547 6.26954 6.57938 7.23025 7.37766 8.75028 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.062298 B = 0.009472 C = 0.009050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.343501 B = 2955.424935 C = 3093.264951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.283 3.717 3 H 0.060 0.940 4 C -0.549 4.549 5 H 0.058 0.942 6 C 0.033 3.967 7 N -0.905 5.905 8 Si 0.971 3.029 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.271 1.271 12 N -0.104 5.104 13 N -0.292 5.292 14 C 0.027 3.973 15 C 0.026 3.974 16 C 0.336 3.664 17 N -0.422 5.422 18 N -0.270 5.270 19 H 0.095 0.905 20 H 0.036 0.964 21 H 0.049 0.951 22 H 0.274 0.726 23 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 -4.559 -4.404 6.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.187 3.813 3 H 0.078 0.922 4 C -0.587 4.587 5 H 0.076 0.924 6 C -0.169 4.169 7 N -0.542 5.542 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.202 1.202 11 H -0.197 1.197 12 N -0.009 5.009 13 N -0.131 5.131 14 C -0.157 4.157 15 C -0.135 4.135 16 C 0.019 3.981 17 N -0.101 5.101 18 N -0.118 5.118 19 H 0.113 0.887 20 H 0.055 0.945 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.238 -3.557 -4.548 5.779 hybrid contribution 0.346 -0.529 0.471 0.788 sum 0.584 -4.085 -4.077 5.801 Atomic orbital electron populations 1.21973 0.94013 1.01542 1.01998 1.19631 0.93654 0.92174 0.75883 0.92240 1.21256 1.33806 1.13638 0.90044 0.92374 1.25545 0.94483 0.95469 1.01452 1.69918 1.35824 1.22984 1.25512 0.85298 0.78359 0.78378 0.78395 1.19800 1.20175 1.19662 1.49108 1.29737 1.05201 1.16854 1.74031 1.22409 1.00280 1.16373 1.25582 0.96819 1.00865 0.92418 1.17973 1.07161 0.94297 0.94025 1.23215 0.91540 0.92931 0.90454 1.81263 1.10041 1.07562 1.11199 1.74410 1.10572 1.27128 0.99680 0.88671 0.94505 0.93179 0.91625 0.73411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 9.13 71.98 0.66 -5.31 14 2 C 0.28 13.41 3.17 44.25 0.14 13.55 14 3 H 0.06 3.01 8.14 -2.39 -0.02 2.99 14 4 C -0.55 -28.00 8.67 25.60 0.22 -27.78 14 5 H 0.06 3.06 7.81 -2.91 -0.02 3.04 14 6 C 0.03 1.63 5.30 84.65 0.45 2.08 14 7 N -0.91 -46.16 11.32 21.45 0.24 -45.92 14 8 Si 0.97 40.18 29.54 68.60 2.03 42.21 14 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 14 10 H -0.28 -11.19 7.11 99.48 0.71 -10.49 14 11 H -0.27 -10.85 7.11 99.48 0.71 -10.14 14 12 N -0.10 -4.46 3.69 -172.55 -0.64 -5.10 14 13 N -0.29 -11.29 11.62 -56.12 -0.65 -11.94 14 14 C 0.03 0.81 12.19 85.47 1.04 1.85 14 15 C 0.03 0.86 7.09 40.97 0.29 1.15 14 16 C 0.34 10.21 15.95 88.33 1.41 11.62 14 17 N -0.42 -13.35 18.54 19.00 0.35 -12.99 14 18 N -0.27 -10.90 12.10 -51.41 -0.62 -11.52 14 19 H 0.09 4.47 6.07 -2.38 -0.01 4.46 14 20 H 0.04 1.44 8.14 -2.39 -0.02 1.42 14 21 H 0.05 2.15 8.13 -2.38 -0.02 2.13 14 22 H 0.27 13.14 8.31 -92.71 -0.77 12.37 14 23 H 0.25 4.38 8.06 -2.91 -0.02 4.35 14 Total: -1.00 -54.76 224.28 6.15 -48.61 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: 1.23 Total: -0.51 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 4.21 Total: -2.84 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -1.32 Total: -87.47 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -54.76 6.15 -48.61 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962120.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.822 kcal (2) G-P(sol) polarization free energy of solvation -54.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds