Wall clock time and date at job start Mon Mar 30 2020 02:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.84030 * 2 1 4 4 C 1.54481 * 110.98036 * 123.75721 * 2 1 3 5 5 C 1.51199 * 104.91983 * 143.69323 * 4 2 1 6 6 C 1.41513 * 142.39419 * 163.12854 * 5 4 2 7 7 C 1.34446 * 106.80289 * 180.02562 * 6 5 4 8 8 O 1.34188 * 108.42389 * 359.97438 * 7 6 5 9 9 C 1.34286 * 110.58346 * 343.15845 * 5 4 2 10 10 C 1.51448 * 110.25114 * 359.97438 * 9 5 4 11 11 H 1.09003 * 110.41907 * 135.80487 * 10 9 5 12 12 C 1.50701 * 110.33435 * 257.99557 * 10 9 5 13 13 H 1.07997 * 119.99596 * 51.03739 * 12 10 9 14 14 C 1.37874 * 119.99961 * 230.75943 * 12 10 9 15 15 N 1.31513 * 120.00208 * 0.28222 * 14 12 10 16 16 Si 1.86796 * 119.99930 * 180.27636 * 14 12 10 17 17 H 1.48496 * 109.47156 * 90.00144 * 16 14 12 18 18 H 1.48502 * 109.47335 * 210.00249 * 16 14 12 19 19 H 1.48511 * 109.47243 * 330.00170 * 16 14 12 20 20 H 1.09000 * 109.47553 * 189.58944 * 1 2 3 21 21 H 1.09005 * 109.47212 * 309.58841 * 1 2 3 22 22 H 1.09003 * 109.47136 * 69.58589 * 1 2 3 23 23 H 1.08997 * 110.35226 * 262.55481 * 4 2 1 24 24 H 1.08998 * 110.34742 * 24.83332 * 4 2 1 25 25 H 1.08000 * 126.59398 * 0.07592 * 6 5 4 26 26 H 1.07994 * 125.78618 * 180.02562 * 7 6 5 27 27 H 0.96993 * 120.00400 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9177 1.0186 0.0000 4 6 2.0831 -0.8015 1.1992 5 6 3.3218 -1.4885 0.6702 6 6 4.5046 -2.1441 1.0870 7 6 5.1610 -2.5078 -0.0286 8 8 4.4439 -2.1109 -1.0911 9 6 3.3240 -1.4895 -0.6726 10 6 2.0820 -0.8013 -1.1995 11 1 2.3382 -0.1290 -2.0183 12 6 1.0722 -1.8219 -1.6573 13 1 0.7889 -2.6326 -1.0025 14 6 0.5057 -1.7173 -2.9100 15 7 0.8508 -0.7300 -3.7074 16 14 -0.7518 -2.9779 -3.4746 17 1 -2.1133 -2.5240 -3.0934 18 1 -0.6749 -3.1274 -4.9500 19 1 -0.4669 -4.2847 -2.8291 20 1 -0.3634 -1.0133 0.1712 21 1 -0.3634 0.6549 0.7920 22 1 -0.3633 0.3585 -0.9631 23 1 2.3424 -0.1294 2.0171 24 1 1.3528 -1.5395 1.5310 25 1 4.8190 -2.3192 2.1052 26 1 6.1049 -3.0313 -0.0636 27 1 0.4525 -0.6566 -4.5888 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260964395.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:42 Heat of formation + Delta-G solvation = 0.105084 kcal Electronic energy + Delta-G solvation = -11969.702613 eV Core-core repulsion = 9886.573547 eV Total energy + Delta-G solvation = -2083.129065 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.37324 -38.63951 -34.68701 -33.05566 -30.70884 -29.21488 -26.57669 -25.60752 -21.94434 -20.89089 -20.51482 -18.57375 -17.49332 -16.72761 -16.36961 -15.76597 -15.27619 -14.39755 -13.98825 -13.58355 -13.36415 -13.31203 -12.89124 -12.68787 -12.54520 -12.17975 -11.77572 -11.74683 -11.19858 -10.94772 -10.64344 -10.34158 -8.97989 -8.15438 -6.27773 1.09133 1.40046 1.40825 1.51026 1.88999 2.11806 2.41220 3.13063 3.77142 4.16638 4.30959 4.36613 4.49822 4.74302 4.87598 4.94482 5.03024 5.17382 5.25948 5.33765 5.51408 5.56770 5.59654 5.67992 5.79375 5.93809 6.22637 6.54444 6.83259 7.36453 8.89731 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.039820 B = 0.014426 C = 0.012175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.999116 B = 1940.463027 C = 2299.232714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.080 4.080 3 H 0.066 0.934 4 C -0.029 4.029 5 C -0.250 4.250 6 C -0.198 4.198 7 C -0.070 4.070 8 O -0.199 6.199 9 C -0.034 4.034 10 C 0.104 3.896 11 H 0.039 0.961 12 C -0.504 4.504 13 H 0.049 0.951 14 C 0.020 3.980 15 N -0.923 5.923 16 Si 0.955 3.045 17 H -0.264 1.264 18 H -0.283 1.283 19 H -0.272 1.272 20 H 0.050 0.950 21 H 0.064 0.936 22 H 0.034 0.966 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.171 0.829 26 H 0.241 0.759 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 -1.106 8.218 8.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.099 4.099 3 H 0.084 0.916 4 C -0.066 4.066 5 C -0.251 4.251 6 C -0.217 4.217 7 C -0.136 4.136 8 O -0.096 6.096 9 C -0.084 4.084 10 C 0.085 3.915 11 H 0.057 0.943 12 C -0.542 4.542 13 H 0.068 0.932 14 C -0.179 4.179 15 N -0.562 5.562 16 Si 0.780 3.220 17 H -0.189 1.189 18 H -0.209 1.209 19 H -0.197 1.197 20 H 0.069 0.931 21 H 0.082 0.918 22 H 0.053 0.947 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.189 0.811 26 H 0.257 0.743 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.807 -1.068 7.739 8.301 hybrid contribution -0.317 -0.695 -0.633 0.992 sum 2.490 -1.762 7.106 7.733 Atomic orbital electron populations 1.21373 0.93333 1.01125 1.00057 1.21957 0.96986 0.97063 0.93906 0.91593 1.20455 0.91585 0.97380 0.97181 1.21677 1.00012 1.08416 0.94989 1.21455 0.95015 1.04598 1.00620 1.24793 0.99966 1.05596 0.83237 1.83826 1.29213 1.59122 1.37414 1.24850 0.88658 0.98660 0.96265 1.18484 0.84501 0.93547 0.94983 0.94263 1.20942 1.22105 1.10906 1.00197 0.93226 1.25722 0.98603 0.97192 0.96394 1.70010 1.44361 1.32449 1.09369 0.85600 0.79713 0.79378 0.77334 1.18944 1.20862 1.19721 0.93139 0.91758 0.94713 0.90018 0.91211 0.81142 0.74313 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.06 8.23 71.98 0.59 -3.47 15 2 C -0.08 -3.42 3.61 -9.80 -0.04 -3.46 15 3 H 0.07 2.65 8.14 -2.39 -0.02 2.64 15 4 C -0.03 -1.10 6.34 30.51 0.19 -0.91 15 5 C -0.25 -10.62 6.96 -19.80 -0.14 -10.75 15 6 C -0.20 -6.97 10.92 22.21 0.24 -6.73 15 7 C -0.07 -2.46 12.08 66.95 0.81 -1.65 15 8 O -0.20 -9.34 10.66 -5.69 -0.06 -9.40 15 9 C -0.03 -1.68 7.51 25.02 0.19 -1.49 15 10 C 0.10 5.44 3.07 -11.55 -0.04 5.41 15 11 H 0.04 2.32 7.01 -2.39 -0.02 2.30 15 12 C -0.50 -27.85 6.26 25.60 0.16 -27.69 15 13 H 0.05 2.76 7.78 -2.91 -0.02 2.74 15 14 C 0.02 1.12 5.46 84.65 0.46 1.58 15 15 N -0.92 -54.01 12.65 21.45 0.27 -53.73 15 16 Si 0.95 43.63 29.54 68.60 2.03 45.66 15 17 H -0.26 -11.45 7.11 99.48 0.71 -10.75 15 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 20 H 0.05 2.06 7.09 -2.39 -0.02 2.04 15 21 H 0.06 2.04 8.14 -2.38 -0.02 2.02 15 22 H 0.03 1.54 8.06 -2.39 -0.02 1.52 15 23 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 24 H 0.07 2.60 7.74 -2.39 -0.02 2.58 15 25 H 0.17 4.57 8.06 -2.91 -0.02 4.55 15 26 H 0.24 5.53 8.06 -2.91 -0.02 5.51 15 27 H 0.27 14.68 8.31 -92.71 -0.77 13.90 15 Total: -1.00 -64.47 231.13 5.83 -58.65 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.15 Total: 7.99 kcal Atomic # 6 Polarization: -51.59 SS G_CDS: 2.44 Total: -49.15 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.27 Total: -53.73 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.06 Total: -9.40 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -64.47 5.83 -58.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260964395.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.752 kcal (2) G-P(sol) polarization free energy of solvation -64.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds