Wall clock time and date at job start Mon Mar 30 2020 02:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.84142 * 2 1 4 4 C 1.54450 * 110.95117 * 123.74175 * 2 1 3 5 5 C 1.51438 * 104.99938 * 143.71001 * 4 2 1 6 6 O 1.34750 * 141.54572 * 163.11123 * 5 4 2 7 7 C 1.34191 * 109.54508 * 179.97438 * 6 5 4 8 8 C 1.34442 * 108.43123 * 0.02562 * 7 6 5 9 9 C 1.34287 * 110.25849 * 343.11460 * 5 4 2 10 10 C 1.51262 * 110.58903 * 0.05406 * 9 5 4 11 11 H 1.08993 * 110.34205 * 257.94112 * 10 9 5 12 12 C 1.50707 * 110.38184 * 135.64680 * 10 9 5 13 13 H 1.07996 * 119.99583 * 279.72750 * 12 10 9 14 14 C 1.37879 * 119.99498 * 99.72419 * 12 10 9 15 15 N 1.31509 * 119.99305 * 179.43658 * 14 12 10 16 16 Si 1.86792 * 120.00402 * 359.43918 * 14 12 10 17 17 H 1.48498 * 109.47342 * 84.70622 * 16 14 12 18 18 H 1.48499 * 109.47443 * 204.70609 * 16 14 12 19 19 H 1.48506 * 109.47068 * 324.70907 * 16 14 12 20 20 H 1.08998 * 109.47036 * 300.69826 * 1 2 3 21 21 H 1.09004 * 109.47049 * 180.70455 * 1 2 3 22 22 H 1.08993 * 109.47089 * 60.70058 * 1 2 3 23 23 H 1.09002 * 110.33449 * 262.58897 * 4 2 1 24 24 H 1.08995 * 110.34059 * 24.72079 * 4 2 1 25 25 H 1.08002 * 125.78500 * 179.97438 * 7 6 5 26 26 H 1.07997 * 126.60323 * 180.02562 * 8 7 6 27 27 H 0.97006 * 119.99866 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 6 2.0822 -0.8012 1.1994 5 6 3.3235 -1.4902 0.6723 6 8 4.4437 -2.1115 1.0906 7 6 5.1595 -2.5101 0.0279 8 6 4.5029 -2.1464 -1.0875 9 6 3.3208 -1.4897 -0.6706 10 6 2.0822 -0.8013 -1.1998 11 1 1.3515 -1.5387 -1.5317 12 6 2.4410 0.1285 -2.3303 13 1 2.8451 1.1070 -2.1170 14 6 2.2534 -0.2704 -3.6367 15 7 2.5561 0.5451 -4.6230 16 14 1.5693 -1.9690 -4.0057 17 1 0.0860 -1.9284 -3.9483 18 1 2.0008 -2.3925 -5.3621 19 1 2.0773 -2.9364 -3.0000 20 1 -0.3633 0.5246 0.8836 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3633 0.5029 -0.8961 23 1 2.3408 -0.1287 2.0173 24 1 1.3508 -1.5375 1.5323 25 1 6.1036 -3.0335 0.0626 26 1 4.8168 -2.3221 -2.1058 27 1 2.4238 0.2647 -5.5422 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260977419.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:36 Heat of formation + Delta-G solvation = 19.167994 kcal Electronic energy + Delta-G solvation = -11952.188361 eV Core-core repulsion = 9869.885925 eV Total energy + Delta-G solvation = -2082.302436 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.85251 -37.04453 -32.46549 -31.68850 -29.37332 -28.20651 -25.12477 -23.04462 -20.41245 -19.40242 -18.84191 -16.93635 -16.13706 -15.30005 -14.47910 -13.96544 -13.50082 -12.83962 -12.68932 -12.14795 -12.06429 -11.93004 -11.20688 -10.99929 -10.69412 -10.40418 -10.35833 -9.88149 -9.55592 -9.36387 -8.64751 -8.54166 -7.41048 -6.07504 -4.06065 2.48900 3.27520 3.36725 3.37179 3.43525 3.57670 4.43064 5.20945 5.23546 5.47414 5.58391 5.88224 5.91866 5.99387 6.14106 6.22517 6.34827 6.50276 6.67224 6.78545 6.88071 7.00948 7.04143 7.23425 7.41622 7.74913 8.00996 8.51998 8.97040 9.55419 11.05650 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.033241 B = 0.017260 C = 0.013392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.136937 B = 1621.817149 C = 2090.263590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 H 0.083 0.917 4 C -0.014 4.014 5 C -0.094 4.094 6 O -0.177 6.177 7 C -0.069 4.069 8 C -0.178 4.178 9 C -0.143 4.143 10 C 0.071 3.929 11 H 0.047 0.953 12 C -0.499 4.499 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.900 5.900 16 Si 0.870 3.130 17 H -0.275 1.275 18 H -0.289 1.289 19 H -0.262 1.262 20 H 0.046 0.954 21 H 0.048 0.952 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.196 0.804 26 H 0.138 0.862 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.725 -4.831 8.715 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.051 4.051 5 C -0.143 4.143 6 O -0.075 6.075 7 C -0.136 4.136 8 C -0.197 4.197 9 C -0.145 4.145 10 C 0.052 3.948 11 H 0.064 0.936 12 C -0.537 4.537 13 H 0.092 0.908 14 C -0.129 4.129 15 N -0.538 5.538 16 Si 0.697 3.303 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.187 1.187 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.213 0.787 26 H 0.156 0.844 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.661 -4.841 8.800 10.065 hybrid contribution 0.029 -0.991 -0.669 1.196 sum -0.633 -5.831 8.130 10.025 Atomic orbital electron populations 1.21691 0.94874 1.01109 1.01530 1.22042 0.95068 0.99562 0.93158 0.89887 1.20766 0.88612 0.96959 0.98782 1.23117 0.90892 1.04889 0.95361 1.83710 1.28818 1.59512 1.35447 1.23768 0.98927 1.06797 0.84094 1.21248 0.95981 1.03369 0.99133 1.22084 0.98730 0.99567 0.94078 1.18418 0.88779 0.93613 0.93977 0.93555 1.20924 1.42376 1.01619 0.88778 0.90787 1.25041 0.94886 0.96670 0.96257 1.69899 1.48581 1.36032 0.99294 0.86939 0.79800 0.85886 0.77641 1.20060 1.21555 1.18659 0.93467 0.93327 0.91510 0.91621 0.90698 0.78732 0.84380 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.11 37.16 0.34 -1.90 15 2 C -0.08 -1.56 3.21 -89.08 -0.29 -1.85 15 3 H 0.08 1.69 7.85 -51.93 -0.41 1.28 15 4 C -0.01 -0.25 6.35 -26.76 -0.17 -0.42 15 5 C -0.09 -1.97 8.21 -35.34 -0.29 -2.26 15 6 O -0.18 -3.53 10.66 4.77 0.05 -3.48 15 7 C -0.07 -1.26 12.08 29.39 0.36 -0.91 15 8 C -0.18 -3.85 10.91 -39.68 -0.43 -4.29 15 9 C -0.14 -3.34 6.26 -104.50 -0.65 -4.00 15 10 C 0.07 1.70 2.02 -91.87 -0.19 1.51 15 11 H 0.05 1.12 5.24 -51.93 -0.27 0.85 15 12 C -0.50 -14.00 8.87 -34.44 -0.31 -14.30 15 13 H 0.07 2.26 7.98 -52.49 -0.42 1.84 15 14 C 0.07 2.10 5.47 -17.82 -0.10 2.00 15 15 N -0.90 -27.42 13.96 55.43 0.77 -26.65 15 16 Si 0.87 21.63 26.89 -169.99 -4.57 17.06 15 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 18 H -0.29 -7.17 7.11 56.52 0.40 -6.76 15 19 H -0.26 -6.42 6.98 56.52 0.39 -6.02 15 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.05 0.76 8.11 -51.93 -0.42 0.34 15 22 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.07 1.17 7.87 -51.93 -0.41 0.76 15 25 H 0.20 2.57 8.06 -52.49 -0.42 2.15 15 26 H 0.14 2.92 8.06 -52.49 -0.42 2.49 15 27 H 0.26 7.54 8.31 -40.82 -0.34 7.21 15 LS Contribution 231.10 15.07 3.48 3.48 Total: -1.00 -31.35 231.10 -5.18 -36.52 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -3.18 Total: -0.53 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -1.73 Total: -26.40 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.77 Total: -26.65 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: 0.05 Total: -3.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.57 Total: 17.06 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -31.35 -5.18 -36.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260977419.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.690 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds