Wall clock time and date at job start Mon Mar 30 2020 02:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.84142 * 2 1 4 4 C 1.54450 * 110.95117 * 123.74175 * 2 1 3 5 5 C 1.51438 * 104.99938 * 143.71001 * 4 2 1 6 6 O 1.34750 * 141.54572 * 163.11123 * 5 4 2 7 7 C 1.34191 * 109.54508 * 179.97438 * 6 5 4 8 8 C 1.34442 * 108.43123 * 0.02562 * 7 6 5 9 9 C 1.34287 * 110.25849 * 343.11460 * 5 4 2 10 10 C 1.51262 * 110.58903 * 0.05406 * 9 5 4 11 11 H 1.08993 * 110.34205 * 257.94112 * 10 9 5 12 12 C 1.50707 * 110.38184 * 135.64680 * 10 9 5 13 13 H 1.07996 * 119.99583 * 279.72750 * 12 10 9 14 14 C 1.37879 * 119.99498 * 99.72419 * 12 10 9 15 15 N 1.31509 * 119.99305 * 179.43658 * 14 12 10 16 16 Si 1.86792 * 120.00402 * 359.43918 * 14 12 10 17 17 H 1.48498 * 109.47342 * 84.70622 * 16 14 12 18 18 H 1.48499 * 109.47443 * 204.70609 * 16 14 12 19 19 H 1.48506 * 109.47068 * 324.70907 * 16 14 12 20 20 H 1.08998 * 109.47036 * 300.69826 * 1 2 3 21 21 H 1.09004 * 109.47049 * 180.70455 * 1 2 3 22 22 H 1.08993 * 109.47089 * 60.70058 * 1 2 3 23 23 H 1.09002 * 110.33449 * 262.58897 * 4 2 1 24 24 H 1.08995 * 110.34059 * 24.72079 * 4 2 1 25 25 H 1.08002 * 125.78500 * 179.97438 * 7 6 5 26 26 H 1.07997 * 126.60323 * 180.02562 * 8 7 6 27 27 H 0.97006 * 119.99866 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 6 2.0822 -0.8012 1.1994 5 6 3.3235 -1.4902 0.6723 6 8 4.4437 -2.1115 1.0906 7 6 5.1595 -2.5101 0.0279 8 6 4.5029 -2.1464 -1.0875 9 6 3.3208 -1.4897 -0.6706 10 6 2.0822 -0.8013 -1.1998 11 1 1.3515 -1.5387 -1.5317 12 6 2.4410 0.1285 -2.3303 13 1 2.8451 1.1070 -2.1170 14 6 2.2534 -0.2704 -3.6367 15 7 2.5561 0.5451 -4.6230 16 14 1.5693 -1.9690 -4.0057 17 1 0.0860 -1.9284 -3.9483 18 1 2.0008 -2.3925 -5.3621 19 1 2.0773 -2.9364 -3.0000 20 1 -0.3633 0.5246 0.8836 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3633 0.5029 -0.8961 23 1 2.3408 -0.1287 2.0173 24 1 1.3508 -1.5375 1.5323 25 1 6.1036 -3.0335 0.0626 26 1 4.8168 -2.3221 -2.1058 27 1 2.4238 0.2647 -5.5422 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260977419.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:36 Heat of formation + Delta-G solvation = -0.757941 kcal Electronic energy + Delta-G solvation = -11953.052414 eV Core-core repulsion = 9869.885925 eV Total energy + Delta-G solvation = -2083.166489 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.43049 -38.66021 -34.59723 -33.27952 -30.86345 -30.09225 -26.60308 -24.97080 -21.98381 -20.99865 -20.48056 -19.04980 -17.71914 -16.94284 -16.30380 -15.50748 -15.15229 -14.75613 -14.30403 -13.96789 -13.61932 -13.34981 -12.92098 -12.75196 -12.28884 -12.05907 -11.93759 -11.73131 -11.63003 -11.10731 -10.74599 -10.31828 -8.99910 -8.30130 -6.32213 0.95609 1.29602 1.33064 1.45409 1.85464 1.91579 2.33261 3.06576 3.81038 3.99203 4.14469 4.32208 4.37787 4.64764 4.74681 4.78084 4.86893 5.06456 5.09572 5.33027 5.35049 5.36326 5.44635 5.60303 5.71110 5.77935 6.29641 6.41428 6.72503 7.32401 8.87079 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.033241 B = 0.017260 C = 0.013392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.136937 B = 1621.817149 C = 2090.263590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.080 4.080 3 H 0.064 0.936 4 C -0.007 4.007 5 C -0.089 4.089 6 O -0.175 6.175 7 C -0.036 4.036 8 C -0.225 4.225 9 C -0.194 4.194 10 C 0.065 3.935 11 H 0.043 0.957 12 C -0.499 4.499 13 H 0.028 0.972 14 C 0.016 3.984 15 N -0.950 5.950 16 Si 0.936 3.064 17 H -0.258 1.258 18 H -0.288 1.288 19 H -0.256 1.256 20 H 0.083 0.917 21 H 0.062 0.938 22 H 0.046 0.954 23 H 0.094 0.906 24 H 0.106 0.894 25 H 0.249 0.751 26 H 0.130 0.870 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 -6.640 10.941 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.099 4.099 3 H 0.083 0.917 4 C -0.043 4.043 5 C -0.138 4.138 6 O -0.072 6.072 7 C -0.102 4.102 8 C -0.244 4.244 9 C -0.196 4.196 10 C 0.046 3.954 11 H 0.061 0.939 12 C -0.537 4.537 13 H 0.047 0.953 14 C -0.181 4.181 15 N -0.591 5.591 16 Si 0.760 3.240 17 H -0.183 1.183 18 H -0.214 1.214 19 H -0.180 1.180 20 H 0.102 0.898 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.113 0.887 24 H 0.124 0.876 25 H 0.265 0.735 26 H 0.148 0.852 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.144 -6.649 11.051 12.948 hybrid contribution 0.285 -0.363 -1.331 1.408 sum -0.859 -7.012 9.721 12.017 Atomic orbital electron populations 1.21671 0.92408 1.02330 1.02335 1.21995 0.97153 0.98282 0.92450 0.91737 1.20851 0.87685 0.97629 0.98170 1.23644 0.91510 1.03921 0.94710 1.83751 1.28497 1.59134 1.35811 1.24627 0.99199 1.04028 0.82342 1.21474 0.96979 1.05795 1.00155 1.22212 0.99534 1.02038 0.95815 1.18453 0.89599 0.93165 0.94174 0.93916 1.21148 1.41224 1.00618 0.90665 0.95327 1.25864 0.95532 1.00677 0.96020 1.70049 1.50885 1.38351 0.99783 0.85879 0.79877 0.80903 0.77297 1.18275 1.21450 1.18040 0.89845 0.91937 0.93515 0.88743 0.87601 0.73515 0.85183 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.11 71.98 0.66 -3.36 15 2 C -0.08 -3.04 3.21 -9.80 -0.03 -3.07 15 3 H 0.06 2.64 7.85 -2.39 -0.02 2.62 15 4 C -0.01 -0.21 6.35 30.58 0.19 -0.01 15 5 C -0.09 -3.50 8.21 25.02 0.21 -3.30 15 6 O -0.17 -6.39 10.66 -5.84 -0.06 -6.45 15 7 C -0.04 -1.19 12.08 66.95 0.81 -0.38 15 8 C -0.22 -9.56 10.91 22.21 0.24 -9.31 15 9 C -0.19 -8.96 6.26 -19.78 -0.12 -9.09 15 10 C 0.06 3.10 2.02 -11.60 -0.02 3.08 15 11 H 0.04 2.04 5.24 -2.39 -0.01 2.03 15 12 C -0.50 -29.09 8.87 25.60 0.23 -28.86 15 13 H 0.03 1.86 7.98 -2.91 -0.02 1.84 15 14 C 0.02 0.94 5.47 84.66 0.46 1.40 15 15 N -0.95 -60.27 13.96 21.45 0.30 -59.97 15 16 Si 0.94 45.46 26.89 68.60 1.84 47.30 15 17 H -0.26 -11.74 7.11 99.48 0.71 -11.03 15 18 H -0.29 -13.82 7.11 99.48 0.71 -13.11 15 19 H -0.26 -12.10 6.98 99.48 0.69 -11.41 15 20 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 21 H 0.06 1.75 8.11 -2.38 -0.02 1.73 15 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.09 2.50 8.14 -2.39 -0.02 2.48 15 24 H 0.11 2.77 7.87 -2.39 -0.02 2.75 15 25 H 0.25 5.30 8.06 -2.91 -0.02 5.27 15 26 H 0.13 5.57 8.06 -2.91 -0.02 5.55 15 27 H 0.26 15.74 8.31 -92.70 -0.77 14.97 15 Total: -1.00 -70.65 231.10 5.84 -64.81 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.14 Total: 7.23 kcal Atomic # 6 Polarization: -55.54 SS G_CDS: 2.62 Total: -52.92 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.30 Total: -59.97 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.06 Total: -6.45 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.84 Total: 47.30 kcal Total: -70.65 5.84 -64.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260977419.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.055 kcal (2) G-P(sol) polarization free energy of solvation -70.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds