Wall clock time and date at job start Mon Mar 30 2020 02:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.86900 * 2 1 4 4 C 1.54456 * 110.94452 * 236.24727 * 2 1 3 5 5 C 1.51441 * 104.99546 * 267.42327 * 4 2 1 6 6 O 1.34742 * 141.54781 * 163.10552 * 5 4 2 7 7 C 1.34201 * 109.54655 * 179.73156 * 6 5 4 8 8 C 1.34441 * 108.42708 * 0.45124 * 7 6 5 9 9 C 1.34287 * 110.25417 * 343.11865 * 5 4 2 10 10 C 1.51198 * 110.58168 * 0.02562 * 9 5 4 11 11 H 1.09002 * 110.35404 * 135.80833 * 10 9 5 12 12 C 1.50700 * 110.34673 * 257.97776 * 10 9 5 13 13 H 1.08004 * 120.00017 * 118.54353 * 12 10 9 14 14 C 1.37880 * 120.00201 * 298.54239 * 12 10 9 15 15 N 1.31514 * 119.99853 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00175 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46723 * 60.00353 * 16 14 12 18 18 H 1.48498 * 109.47139 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47156 * 300.00275 * 16 14 12 20 20 H 1.09004 * 109.47033 * 296.23822 * 1 2 3 21 21 H 1.08995 * 109.47599 * 56.23596 * 1 2 3 22 22 H 1.08994 * 109.47404 * 176.24415 * 1 2 3 23 23 H 1.08999 * 110.33888 * 26.30315 * 4 2 1 24 24 H 1.08994 * 110.33757 * 148.54436 * 4 2 1 25 25 H 1.08005 * 125.78149 * 180.31937 * 7 6 5 26 26 H 1.08002 * 126.60147 * 179.83963 * 8 7 6 27 27 H 0.96995 * 120.00028 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0821 -0.8015 -1.1994 5 6 2.2836 -2.2068 -0.6721 6 8 2.4649 -3.4748 -1.0903 7 6 2.5875 -4.2849 -0.0274 8 6 2.4755 -3.5425 1.0879 9 6 2.2836 -2.2040 0.6707 10 6 2.0823 -0.8018 1.1993 11 1 1.3633 -0.8050 2.0186 12 6 3.3951 -0.2211 1.6578 13 1 3.7869 0.6676 1.1853 14 6 4.0962 -0.8242 2.6805 15 7 3.6193 -1.9066 3.2554 16 14 5.7239 -0.1048 3.2483 17 1 5.5102 1.2835 3.7300 18 1 6.2731 -0.9331 4.3517 19 1 6.6825 -0.0933 2.1143 20 1 -0.3633 0.4544 0.9218 21 1 -0.3634 0.5711 -0.8543 22 1 -0.3634 -1.0254 -0.0673 23 1 1.3619 -0.8035 -2.0175 24 1 3.0317 -0.3815 -1.5307 25 1 2.7467 -5.3525 -0.0622 26 1 2.5270 -3.8985 2.1062 27 1 4.1127 -2.3312 3.9746 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260977420.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:38 Heat of formation + Delta-G solvation = 19.606707 kcal Electronic energy + Delta-G solvation = -12065.723401 eV Core-core repulsion = 9983.439989 eV Total energy + Delta-G solvation = -2082.283412 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.46201 -36.85242 -32.50186 -31.11972 -28.87805 -27.48669 -25.26377 -23.19447 -20.28653 -19.02080 -18.57874 -16.58799 -15.38030 -15.01038 -14.47717 -13.72445 -13.44296 -12.91241 -12.49428 -11.88701 -11.56068 -11.28081 -11.17365 -10.86002 -10.54088 -10.27860 -10.19200 -10.08693 -9.53038 -9.16078 -8.41740 -8.17813 -7.03619 -5.97821 -4.04521 2.88287 3.32458 3.36774 3.39261 3.74519 4.06331 4.45390 5.31943 5.53608 5.65646 5.83466 5.96701 6.20741 6.32117 6.37589 6.48847 6.54311 6.79322 6.84526 6.98317 7.27547 7.36940 7.42909 7.76912 7.84235 7.96707 8.35524 8.43578 8.97070 9.59224 11.08408 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.035030 B = 0.016400 C = 0.013036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.121643 B = 1706.856640 C = 2147.392119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.081 0.919 4 C 0.001 3.999 5 C -0.111 4.111 6 O -0.184 6.184 7 C -0.096 4.096 8 C -0.150 4.150 9 C -0.102 4.102 10 C 0.105 3.895 11 H 0.034 0.966 12 C -0.513 4.513 13 H 0.058 0.942 14 C 0.067 3.933 15 N -0.877 5.877 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 H 0.054 0.946 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.188 0.812 26 H 0.144 0.856 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.224 -0.209 -5.067 6.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.099 0.901 4 C -0.037 4.037 5 C -0.159 4.159 6 O -0.083 6.083 7 C -0.162 4.162 8 C -0.169 4.169 9 C -0.103 4.103 10 C 0.087 3.913 11 H 0.052 0.948 12 C -0.551 4.551 13 H 0.076 0.924 14 C -0.136 4.136 15 N -0.514 5.514 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.204 1.204 20 H 0.073 0.927 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.204 0.796 26 H 0.161 0.839 27 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.176 -0.418 -5.207 6.113 hybrid contribution 1.223 -0.026 0.635 1.378 sum -1.953 -0.444 -4.572 4.991 Atomic orbital electron populations 1.21769 0.96019 1.01094 1.00588 1.22066 0.94084 0.99183 0.95607 0.90077 1.20488 1.00464 0.85104 0.97602 1.22994 1.12001 0.85190 0.95710 1.83655 1.72806 1.16319 1.35486 1.23714 1.12279 0.95627 0.84598 1.21365 1.03813 0.92927 0.98834 1.21590 0.99366 0.96196 0.93184 1.17888 0.96254 0.85639 0.91516 0.94799 1.21024 1.05292 1.11170 1.17608 0.92356 1.24960 0.97577 0.94803 0.96283 1.69972 1.38409 1.18981 1.24049 0.86695 0.84194 0.79089 0.78246 1.20207 1.21325 1.20392 0.92693 0.93776 0.93158 0.92451 0.90851 0.79556 0.83868 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.12 37.16 0.34 -2.04 15 2 C -0.09 -1.85 3.22 -89.08 -0.29 -2.14 15 3 H 0.08 1.59 7.73 -51.93 -0.40 1.19 15 4 C 0.00 0.01 6.33 -26.75 -0.17 -0.16 15 5 C -0.11 -2.58 8.21 -35.34 -0.29 -2.87 15 6 O -0.18 -4.15 10.66 4.77 0.05 -4.10 15 7 C -0.10 -2.01 12.08 29.39 0.36 -1.65 15 8 C -0.15 -3.62 9.95 -39.68 -0.39 -4.02 15 9 C -0.10 -2.58 5.52 -104.53 -0.58 -3.15 15 10 C 0.11 2.67 2.38 -91.91 -0.22 2.45 15 11 H 0.03 0.93 7.91 -51.93 -0.41 0.51 15 12 C -0.51 -14.10 8.54 -34.44 -0.29 -14.40 15 13 H 0.06 1.56 7.57 -52.48 -0.40 1.16 15 14 C 0.07 1.86 5.32 -17.82 -0.09 1.76 15 15 N -0.88 -24.99 11.18 55.43 0.62 -24.38 15 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 15 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 20 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 15 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.06 0.97 7.91 -51.93 -0.41 0.56 15 24 H 0.07 1.42 8.14 -51.93 -0.42 0.99 15 25 H 0.19 3.00 8.06 -52.48 -0.42 2.58 15 26 H 0.14 3.52 7.53 -52.49 -0.40 3.12 15 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 LS Contribution 230.97 15.07 3.48 3.48 Total: -1.00 -29.90 230.97 -5.77 -35.67 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.26 Total: -0.89 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -1.63 Total: -26.21 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.62 Total: -24.38 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: 0.05 Total: -4.10 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.90 -5.77 -35.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260977420.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.272 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds