Wall clock time and date at job start Mon Mar 30 2020 02:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.86900 * 2 1 4 4 C 1.54456 * 110.94452 * 236.24727 * 2 1 3 5 5 C 1.51441 * 104.99546 * 267.42327 * 4 2 1 6 6 O 1.34742 * 141.54781 * 163.10552 * 5 4 2 7 7 C 1.34201 * 109.54655 * 179.73156 * 6 5 4 8 8 C 1.34441 * 108.42708 * 0.45124 * 7 6 5 9 9 C 1.34287 * 110.25417 * 343.11865 * 5 4 2 10 10 C 1.51198 * 110.58168 * 0.02562 * 9 5 4 11 11 H 1.09002 * 110.35404 * 135.80833 * 10 9 5 12 12 C 1.50700 * 110.34673 * 257.97776 * 10 9 5 13 13 H 1.08004 * 120.00017 * 118.54353 * 12 10 9 14 14 C 1.37880 * 120.00201 * 298.54239 * 12 10 9 15 15 N 1.31514 * 119.99853 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00175 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46723 * 60.00353 * 16 14 12 18 18 H 1.48498 * 109.47139 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47156 * 300.00275 * 16 14 12 20 20 H 1.09004 * 109.47033 * 296.23822 * 1 2 3 21 21 H 1.08995 * 109.47599 * 56.23596 * 1 2 3 22 22 H 1.08994 * 109.47404 * 176.24415 * 1 2 3 23 23 H 1.08999 * 110.33888 * 26.30315 * 4 2 1 24 24 H 1.08994 * 110.33757 * 148.54436 * 4 2 1 25 25 H 1.08005 * 125.78149 * 180.31937 * 7 6 5 26 26 H 1.08002 * 126.60147 * 179.83963 * 8 7 6 27 27 H 0.96995 * 120.00028 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0821 -0.8015 -1.1994 5 6 2.2836 -2.2068 -0.6721 6 8 2.4649 -3.4748 -1.0903 7 6 2.5875 -4.2849 -0.0274 8 6 2.4755 -3.5425 1.0879 9 6 2.2836 -2.2040 0.6707 10 6 2.0823 -0.8018 1.1993 11 1 1.3633 -0.8050 2.0186 12 6 3.3951 -0.2211 1.6578 13 1 3.7869 0.6676 1.1853 14 6 4.0962 -0.8242 2.6805 15 7 3.6193 -1.9066 3.2554 16 14 5.7239 -0.1048 3.2483 17 1 5.5102 1.2835 3.7300 18 1 6.2731 -0.9331 4.3517 19 1 6.6825 -0.0933 2.1143 20 1 -0.3633 0.4544 0.9218 21 1 -0.3634 0.5711 -0.8543 22 1 -0.3634 -1.0254 -0.0673 23 1 1.3619 -0.8035 -2.0175 24 1 3.0317 -0.3815 -1.5307 25 1 2.7467 -5.3525 -0.0622 26 1 2.5270 -3.8985 2.1062 27 1 4.1127 -2.3312 3.9746 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260977420.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:38 Heat of formation + Delta-G solvation = 2.249824 kcal Electronic energy + Delta-G solvation = -12066.476052 eV Core-core repulsion = 9983.439989 eV Total energy + Delta-G solvation = -2083.036063 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.23089 -38.57408 -34.52304 -32.90962 -30.47601 -29.42750 -26.90800 -25.13374 -22.03028 -20.73006 -20.35575 -18.56531 -17.22423 -16.80437 -16.41316 -15.36479 -15.05527 -14.62775 -14.25238 -13.58123 -13.34517 -13.09704 -12.97769 -12.59245 -12.39772 -12.01954 -11.95462 -11.73489 -11.41879 -10.95594 -10.50773 -10.05303 -8.81863 -8.06181 -6.20396 1.13841 1.39926 1.41573 1.48012 2.05925 2.19336 2.44645 3.21991 3.94640 4.07099 4.32431 4.43239 4.60288 4.75722 4.80618 4.87713 5.05363 5.20045 5.31256 5.35168 5.54154 5.56560 5.61913 5.78213 5.90620 6.04072 6.30701 6.63945 6.89622 7.46070 8.97950 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.035030 B = 0.016400 C = 0.013036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.121643 B = 1706.856640 C = 2147.392119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 H 0.088 0.912 4 C 0.004 3.996 5 C -0.113 4.113 6 O -0.183 6.183 7 C -0.068 4.068 8 C -0.192 4.192 9 C -0.142 4.142 10 C 0.096 3.904 11 H -0.004 1.004 12 C -0.531 4.531 13 H 0.060 0.940 14 C 0.015 3.985 15 N -0.902 5.902 16 Si 0.951 3.049 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.276 1.276 20 H 0.052 0.948 21 H 0.081 0.919 22 H 0.039 0.961 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.238 0.762 26 H 0.127 0.873 27 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 0.104 -6.673 7.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.104 4.104 3 H 0.106 0.894 4 C -0.033 4.033 5 C -0.162 4.162 6 O -0.081 6.081 7 C -0.134 4.134 8 C -0.212 4.212 9 C -0.144 4.144 10 C 0.077 3.923 11 H 0.014 0.986 12 C -0.569 4.569 13 H 0.079 0.921 14 C -0.185 4.185 15 N -0.540 5.540 16 Si 0.777 3.223 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.202 1.202 20 H 0.071 0.929 21 H 0.100 0.900 22 H 0.058 0.942 23 H 0.112 0.888 24 H 0.098 0.902 25 H 0.254 0.746 26 H 0.145 0.855 27 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.981 -0.092 -6.822 7.445 hybrid contribution 1.133 -0.172 1.168 1.636 sum -1.848 -0.263 -5.654 5.954 Atomic orbital electron populations 1.21711 0.93704 1.01124 1.02206 1.22050 0.96056 0.98778 0.93523 0.89361 1.20614 1.01788 0.82710 0.98156 1.23569 1.10993 0.86342 0.95300 1.83684 1.72410 1.16251 1.35794 1.24499 1.08686 0.97170 0.83018 1.21459 1.06801 0.93624 0.99312 1.21792 1.01417 0.96550 0.94662 1.17919 0.94743 0.87100 0.92489 0.98577 1.21427 1.06334 1.11303 1.17804 0.92144 1.25752 1.00835 0.95270 0.96645 1.70123 1.39517 1.20019 1.24350 0.85728 0.80235 0.78699 0.77663 1.19178 1.21238 1.20185 0.92931 0.89999 0.94191 0.88762 0.90243 0.74589 0.85492 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.12 71.98 0.66 -3.60 15 2 C -0.09 -3.38 3.22 -9.80 -0.03 -3.41 15 3 H 0.09 3.31 7.73 -2.39 -0.02 3.29 15 4 C 0.00 0.16 6.33 30.58 0.19 0.35 15 5 C -0.11 -5.14 8.21 25.02 0.21 -4.93 15 6 O -0.18 -7.86 10.66 -5.84 -0.06 -7.92 15 7 C -0.07 -2.71 12.08 66.95 0.81 -1.90 15 8 C -0.19 -9.40 9.95 22.21 0.22 -9.18 15 9 C -0.14 -7.30 5.52 -19.80 -0.11 -7.40 15 10 C 0.10 4.95 2.38 -11.63 -0.03 4.92 15 11 H 0.00 -0.22 7.91 -2.39 -0.02 -0.24 15 12 C -0.53 -29.54 8.54 25.60 0.22 -29.32 15 13 H 0.06 3.23 7.57 -2.91 -0.02 3.21 15 14 C 0.02 0.86 5.32 84.66 0.45 1.31 15 15 N -0.90 -52.90 11.18 21.45 0.24 -52.66 15 16 Si 0.95 44.32 29.54 68.60 2.03 46.35 15 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 15 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 20 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.09 2.82 7.91 -2.39 -0.02 2.80 15 24 H 0.08 2.86 8.14 -2.39 -0.02 2.84 15 25 H 0.24 6.73 8.06 -2.91 -0.02 6.71 15 26 H 0.13 6.50 7.53 -2.91 -0.02 6.47 15 27 H 0.26 14.44 8.31 -92.71 -0.77 13.67 15 Total: -1.00 -65.17 230.97 5.94 -59.23 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.15 Total: 8.16 kcal Atomic # 6 Polarization: -55.75 SS G_CDS: 2.59 Total: -53.17 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.24 Total: -52.66 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.06 Total: -7.92 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -65.17 5.94 -59.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260977420.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.481 kcal (2) G-P(sol) polarization free energy of solvation -65.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds