Wall clock time and date at job start Mon Mar 30 2020 02:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47605 * 2 1 4 4 C 1.50707 * 109.46971 * 120.00217 * 2 1 3 5 5 H 1.07995 * 119.99938 * 114.48025 * 4 2 1 6 6 C 1.37874 * 119.99442 * 294.48081 * 4 2 1 7 7 N 1.31519 * 119.99592 * 164.73695 * 6 4 2 8 8 Si 1.86797 * 120.00453 * 344.74204 * 6 4 2 9 9 H 1.48507 * 109.46825 * 269.99742 * 8 6 4 10 10 H 1.48494 * 109.47417 * 149.99987 * 8 6 4 11 11 H 1.48496 * 109.47158 * 29.99709 * 8 6 4 12 12 N 1.46503 * 109.46818 * 239.99426 * 2 1 3 13 13 C 1.34844 * 125.67831 * 325.00398 * 12 2 1 14 14 C 1.36972 * 106.03711 * 179.97438 * 13 12 2 15 15 C 1.43205 * 126.97792 * 180.02562 * 14 13 12 16 16 N 6.04344 * 92.96725 * 228.78025 * 2 1 3 17 17 N 1.34810 * 106.04302 * 359.97438 * 14 13 12 18 18 N 1.28616 * 108.66983 * 359.76111 * 17 14 13 19 19 H 1.09001 * 109.46787 * 294.07202 * 1 2 3 20 20 H 1.09005 * 109.46942 * 54.06795 * 1 2 3 21 21 H 1.08995 * 109.47367 * 174.06654 * 1 2 3 22 22 H 0.96991 * 119.99938 * 354.94603 * 7 6 4 23 23 H 1.08003 * 126.97694 * 359.97438 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5777 -1.6376 1.1339 6 6 1.7956 -0.1768 2.4795 7 7 1.9572 -0.9190 3.5531 8 14 1.2451 1.6004 2.6469 9 1 2.4366 2.4780 2.7710 10 1 0.3965 1.7439 3.8569 11 1 0.4648 1.9921 1.4457 12 7 2.0183 -0.6908 -1.1961 13 6 1.4344 -1.7551 -1.7831 14 6 2.2196 -2.0715 -2.8599 15 6 2.0092 -3.1337 -3.7969 16 7 1.8429 -3.9770 -4.5397 17 7 3.2301 -1.1791 -2.8591 18 7 3.0718 -0.3787 -1.8649 19 1 -0.3633 0.4192 0.9383 20 1 -0.3633 0.6031 -0.8322 21 1 -0.3634 -1.0221 -0.1062 22 1 2.1713 -1.8608 3.4639 23 1 0.5311 -2.2563 -1.4680 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261010574.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:29 Heat of formation + Delta-G solvation = 122.326142 kcal Electronic energy + Delta-G solvation = -11232.564113 eV Core-core repulsion = 9083.487359 eV Total energy + Delta-G solvation = -2149.076755 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.071 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.92759 -36.52493 -35.63617 -32.74728 -31.17975 -30.16915 -25.51821 -23.87825 -23.21925 -20.54555 -18.55406 -18.06028 -16.08729 -15.89054 -14.59153 -13.88447 -13.69069 -13.31680 -13.11885 -12.91545 -12.42469 -12.28273 -11.83695 -11.40064 -11.03472 -10.71835 -10.64092 -10.05523 -9.85880 -9.24978 -9.03862 -8.74560 -6.91583 -4.62154 1.64846 2.28986 2.69623 2.89253 3.10568 3.19508 3.29826 3.66648 3.94542 4.12627 4.78046 5.01301 5.25807 5.47399 5.71408 5.89089 5.96387 6.11167 6.35178 6.71819 7.03039 7.19525 7.57392 7.93877 8.38233 8.79065 9.09498 10.48218 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.065793 B = 0.009911 C = 0.009683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.474146 B = 2824.533680 C = 2890.929146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.237 3.763 3 H 0.072 0.928 4 C -0.629 4.629 5 H 0.069 0.931 6 C 0.048 3.952 7 N -0.880 5.880 8 Si 1.036 2.964 9 H -0.277 1.277 10 H -0.277 1.277 11 H -0.269 1.269 12 N -0.235 5.235 13 C 0.024 3.976 14 C 0.006 3.994 15 C 0.318 3.682 16 N -0.418 5.418 17 N -0.248 5.248 18 N -0.070 5.070 19 H 0.082 0.918 20 H 0.042 0.958 21 H 0.061 0.939 22 H 0.276 0.724 23 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.763 2.525 -5.212 7.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.137 3.863 3 H 0.090 0.910 4 C -0.667 4.667 5 H 0.087 0.913 6 C -0.161 4.161 7 N -0.510 5.510 8 Si 0.862 3.138 9 H -0.203 1.203 10 H -0.202 1.202 11 H -0.194 1.194 12 N -0.024 5.024 13 C -0.135 4.135 14 C -0.134 4.134 15 C 0.000 4.000 16 N -0.096 5.096 17 N -0.116 5.116 18 N -0.051 5.051 19 H 0.100 0.900 20 H 0.061 0.939 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.141 3.429 -5.256 7.519 hybrid contribution -0.400 -1.652 -0.478 1.766 sum -4.541 1.777 -5.734 7.527 Atomic orbital electron populations 1.22595 0.95536 1.01955 1.02184 1.20190 0.92426 0.94508 0.79141 0.91013 1.22037 1.43027 1.11978 0.89674 0.91252 1.25758 0.93666 1.05628 0.91083 1.70790 1.41030 1.08769 1.30454 0.84200 0.77919 0.74864 0.76813 1.20264 1.20216 1.19442 1.47931 1.15049 1.19238 1.20194 1.23431 1.02118 0.93547 0.94416 1.16802 0.99111 0.99474 0.98028 1.23639 0.93211 0.91364 0.91760 1.81227 1.08354 1.10617 1.09426 1.75495 1.19475 1.02687 1.13961 1.78227 1.04871 1.20370 1.01593 0.89967 0.93906 0.92026 0.91383 0.78687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 8.25 37.16 0.31 -2.44 14 2 C 0.24 4.76 2.77 -69.08 -0.19 4.56 14 3 H 0.07 1.44 6.77 -51.93 -0.35 1.09 14 4 C -0.63 -15.29 9.12 -34.44 -0.31 -15.61 14 5 H 0.07 1.90 8.06 -52.49 -0.42 1.47 14 6 C 0.05 1.19 5.33 -17.82 -0.09 1.10 14 7 N -0.88 -23.97 13.70 55.43 0.76 -23.21 14 8 Si 1.04 20.98 26.18 -169.99 -4.45 16.53 14 9 H -0.28 -5.58 7.11 56.52 0.40 -5.18 14 10 H -0.28 -5.66 7.11 56.52 0.40 -5.26 14 11 H -0.27 -4.69 5.53 56.52 0.31 -4.38 14 12 N -0.24 -4.56 3.22 -55.58 -0.18 -4.74 14 13 C 0.02 0.40 10.62 -16.69 -0.18 0.23 14 14 C 0.01 0.11 7.00 -85.09 -0.60 -0.48 14 15 C 0.32 5.21 15.92 -22.47 -0.36 4.85 14 16 N -0.42 -7.12 18.54 41.84 0.78 -6.34 14 17 N -0.25 -4.87 12.46 32.01 0.40 -4.47 14 18 N -0.07 -1.45 13.13 60.35 0.79 -0.66 14 19 H 0.08 1.40 5.05 -51.93 -0.26 1.14 14 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 14 21 H 0.06 0.94 6.85 -51.93 -0.36 0.59 14 22 H 0.28 7.54 8.73 -40.82 -0.36 7.18 14 23 H 0.20 2.54 7.14 -52.48 -0.37 2.16 14 LS Contribution 216.71 15.07 3.27 3.27 Total: -1.00 -26.93 216.71 -1.49 -28.43 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -1.43 Total: -1.00 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -1.42 Total: -7.79 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 2.55 Total: -39.43 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.45 Total: 16.53 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -26.93 -1.49 -28.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010574.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.752 kcal (2) G-P(sol) polarization free energy of solvation -26.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds