Wall clock time and date at job start Mon Mar 30 2020 02:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47605 * 2 1 4 4 C 1.50707 * 109.46971 * 120.00217 * 2 1 3 5 5 H 1.07995 * 119.99938 * 114.48025 * 4 2 1 6 6 C 1.37874 * 119.99442 * 294.48081 * 4 2 1 7 7 N 1.31519 * 119.99592 * 164.73695 * 6 4 2 8 8 Si 1.86797 * 120.00453 * 344.74204 * 6 4 2 9 9 H 1.48507 * 109.46825 * 269.99742 * 8 6 4 10 10 H 1.48494 * 109.47417 * 149.99987 * 8 6 4 11 11 H 1.48496 * 109.47158 * 29.99709 * 8 6 4 12 12 N 1.46503 * 109.46818 * 239.99426 * 2 1 3 13 13 C 1.34844 * 125.67831 * 325.00398 * 12 2 1 14 14 C 1.36972 * 106.03711 * 179.97438 * 13 12 2 15 15 C 1.43205 * 126.97792 * 180.02562 * 14 13 12 16 16 N 6.04344 * 92.96725 * 228.78025 * 2 1 3 17 17 N 1.34810 * 106.04302 * 359.97438 * 14 13 12 18 18 N 1.28616 * 108.66983 * 359.76111 * 17 14 13 19 19 H 1.09001 * 109.46787 * 294.07202 * 1 2 3 20 20 H 1.09005 * 109.46942 * 54.06795 * 1 2 3 21 21 H 1.08995 * 109.47367 * 174.06654 * 1 2 3 22 22 H 0.96991 * 119.99938 * 354.94603 * 7 6 4 23 23 H 1.08003 * 126.97694 * 359.97438 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5777 -1.6376 1.1339 6 6 1.7956 -0.1768 2.4795 7 7 1.9572 -0.9190 3.5531 8 14 1.2451 1.6004 2.6469 9 1 2.4366 2.4780 2.7710 10 1 0.3965 1.7439 3.8569 11 1 0.4648 1.9921 1.4457 12 7 2.0183 -0.6908 -1.1961 13 6 1.4344 -1.7551 -1.7831 14 6 2.2196 -2.0715 -2.8599 15 6 2.0092 -3.1337 -3.7969 16 7 1.8429 -3.9770 -4.5397 17 7 3.2301 -1.1791 -2.8591 18 7 3.0718 -0.3787 -1.8649 19 1 -0.3633 0.4192 0.9383 20 1 -0.3633 0.6031 -0.8322 21 1 -0.3634 -1.0221 -0.1062 22 1 2.1713 -1.8608 3.4639 23 1 0.5311 -2.2563 -1.4680 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261010574.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:29 Heat of formation + Delta-G solvation = 103.749955 kcal Electronic energy + Delta-G solvation = -11233.369637 eV Core-core repulsion = 9083.487359 eV Total energy + Delta-G solvation = -2149.882279 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.071 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.39605 -37.91740 -37.18679 -34.54957 -32.62062 -31.70204 -27.13073 -25.38816 -24.76678 -22.06492 -20.07543 -19.84335 -17.55002 -17.39819 -16.06096 -15.40570 -15.22797 -14.71570 -14.55134 -14.39299 -14.06923 -13.70349 -13.37427 -12.88203 -12.52229 -12.17449 -12.13491 -11.59794 -11.40611 -10.97449 -10.63865 -10.44633 -8.89277 -6.59932 0.29642 0.78928 1.34561 1.44085 1.53147 1.58430 1.73615 2.31029 2.46597 2.53920 2.95192 3.70401 3.87907 4.03436 4.26718 4.55027 4.64343 4.74139 4.96145 5.36950 5.47049 5.54660 5.89606 6.23731 6.35906 7.20454 7.31040 8.49823 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.065793 B = 0.009911 C = 0.009683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.474146 B = 2824.533680 C = 2890.929146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.235 3.765 3 H 0.078 0.922 4 C -0.627 4.627 5 H 0.024 0.976 6 C 0.002 3.998 7 N -0.919 5.919 8 Si 1.072 2.928 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.217 1.217 12 N -0.247 5.247 13 C 0.040 3.960 14 C 0.008 3.992 15 C 0.332 3.668 16 N -0.424 5.424 17 N -0.262 5.262 18 N -0.099 5.099 19 H 0.081 0.919 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.258 0.742 23 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 3.541 -6.381 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.136 3.864 3 H 0.095 0.905 4 C -0.665 4.665 5 H 0.043 0.957 6 C -0.199 4.199 7 N -0.552 5.552 8 Si 0.891 3.109 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.140 1.140 12 N -0.036 5.036 13 C -0.118 4.118 14 C -0.132 4.132 15 C 0.014 3.986 16 N -0.103 5.103 17 N -0.130 5.130 18 N -0.079 5.079 19 H 0.100 0.900 20 H 0.094 0.906 21 H 0.093 0.907 22 H 0.068 0.932 23 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -5.790 4.432 -6.468 9.747 hybrid contribution 0.190 -2.088 -0.184 2.105 sum -5.600 2.344 -6.652 9.006 Atomic orbital electron populations 1.22533 0.92140 1.03767 1.03556 1.20147 0.94721 0.94008 0.77548 0.90470 1.22091 1.41955 1.10405 0.92006 0.95723 1.27170 0.93077 1.08936 0.90761 1.70930 1.44278 1.08131 1.31850 0.83843 0.78198 0.70066 0.78819 1.20357 1.20653 1.13959 1.47885 1.15240 1.20199 1.20271 1.24032 1.02530 0.92092 0.93179 1.16862 0.98714 0.99250 0.98415 1.23353 0.92907 0.90949 0.91384 1.81254 1.08621 1.10818 1.09567 1.75450 1.20316 1.03231 1.14026 1.78218 1.05844 1.21429 1.02378 0.89998 0.90577 0.90672 0.93226 0.75011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.71 8.25 71.98 0.59 -4.12 14 2 C 0.24 8.89 2.77 44.25 0.12 9.01 14 3 H 0.08 2.86 6.77 -2.39 -0.02 2.84 14 4 C -0.63 -30.37 9.12 25.60 0.23 -30.14 14 5 H 0.02 1.38 8.06 -2.91 -0.02 1.36 14 6 C 0.00 0.11 5.33 84.65 0.45 0.56 14 7 N -0.92 -51.34 13.70 21.45 0.29 -51.05 14 8 Si 1.07 40.50 26.18 68.60 1.80 42.29 14 9 H -0.28 -10.50 7.11 99.48 0.71 -9.80 14 10 H -0.28 -10.79 7.11 99.48 0.71 -10.09 14 11 H -0.22 -6.38 5.53 99.48 0.55 -5.83 14 12 N -0.25 -9.09 3.22 -329.75 -1.06 -10.15 14 13 C 0.04 1.23 10.62 83.93 0.89 2.12 14 14 C 0.01 0.28 7.00 39.64 0.28 0.55 14 15 C 0.33 10.16 15.92 88.33 1.41 11.56 14 16 N -0.42 -13.59 18.54 19.00 0.35 -13.24 14 17 N -0.26 -9.97 12.46 -52.63 -0.66 -10.63 14 18 N -0.10 -3.97 13.13 37.02 0.49 -3.48 14 19 H 0.08 2.43 5.05 -2.39 -0.01 2.42 14 20 H 0.08 1.76 8.14 -2.38 -0.02 1.74 14 21 H 0.07 1.98 6.85 -2.39 -0.02 1.96 14 22 H 0.26 14.80 8.73 -92.72 -0.81 13.99 14 23 H 0.23 5.07 7.14 -2.91 -0.02 5.05 14 Total: -1.00 -59.28 216.71 6.23 -53.04 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.05 Total: 3.66 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 3.98 Total: -10.44 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -0.59 Total: -88.55 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.80 Total: 42.29 kcal Total: -59.28 6.23 -53.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010574.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.792 kcal (2) G-P(sol) polarization free energy of solvation -59.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds