Wall clock time and date at job start Mon Mar 30 2020 02:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47731 * 2 1 4 4 C 1.50700 * 109.47099 * 239.99957 * 2 1 3 5 5 H 1.08004 * 119.99905 * 245.62052 * 4 2 1 6 6 C 1.37874 * 119.99917 * 65.62285 * 4 2 1 7 7 N 1.31520 * 119.99972 * 197.22172 * 6 4 2 8 8 Si 1.86802 * 120.00182 * 17.49558 * 6 4 2 9 9 H 1.48499 * 109.47062 * 179.72501 * 8 6 4 10 10 H 1.48494 * 109.47088 * 299.72610 * 8 6 4 11 11 H 1.48501 * 109.47064 * 59.72386 * 8 6 4 12 12 N 1.46508 * 109.47138 * 119.99937 * 2 1 3 13 13 C 1.34843 * 125.67073 * 34.71825 * 12 2 1 14 14 C 1.36982 * 106.03475 * 179.88462 * 13 12 2 15 15 C 1.43196 * 126.98040 * 180.11101 * 14 13 12 16 16 N 6.04351 * 92.96489 * 131.21108 * 2 1 3 17 17 N 1.34811 * 106.03554 * 0.36665 * 14 13 12 18 18 N 1.28615 * 125.66852 * 215.02074 * 12 2 1 19 19 H 1.09003 * 109.46773 * 65.89649 * 1 2 3 20 20 H 1.08997 * 109.47222 * 185.90271 * 1 2 3 21 21 H 1.09002 * 109.46697 * 305.90071 * 1 2 3 22 22 H 0.97001 * 120.00023 * 355.06452 * 7 6 4 23 23 H 1.08006 * 126.98220 * 0.02562 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5763 -1.6384 -1.1339 6 6 1.7974 -0.1757 -2.4794 7 7 1.9215 -0.9281 -3.5509 8 14 1.3104 1.6196 -2.6502 9 1 1.1232 1.9472 -4.0865 10 1 0.0410 1.8600 -1.9182 11 1 2.3799 2.4789 -2.0818 12 7 2.0183 -0.6906 1.1962 13 6 1.4315 -1.7517 1.7862 14 6 2.2197 -2.0714 2.8600 15 6 2.0094 -3.1336 3.7970 16 7 1.8426 -3.9763 4.5404 17 7 3.2305 -1.1793 2.8587 18 7 3.0751 -0.3822 1.8614 19 1 -0.3633 0.4197 -0.9381 20 1 -0.3633 -1.0222 0.1057 21 1 -0.3633 0.6026 0.8325 22 1 2.2472 -1.8382 -3.4693 23 1 0.5254 -2.2498 1.4741 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261010575.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:30 Heat of formation + Delta-G solvation = 103.257534 kcal Electronic energy + Delta-G solvation = -11229.674896 eV Core-core repulsion = 9079.771264 eV Total energy + Delta-G solvation = -2149.903632 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.071 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.39995 -37.91504 -37.17480 -34.54676 -32.62264 -31.68340 -27.13800 -25.38936 -24.76428 -22.06884 -20.07809 -19.83594 -17.53792 -17.39784 -16.04426 -15.45494 -15.23776 -14.70986 -14.54656 -14.37645 -14.06866 -13.73420 -13.40313 -12.88647 -12.48830 -12.18217 -12.00072 -11.68591 -11.52849 -11.00461 -10.56022 -10.42798 -8.90691 -6.59934 0.29271 0.78580 1.34231 1.42783 1.50230 1.60054 1.75849 2.30803 2.43946 2.53667 2.95013 3.70104 3.87583 4.03128 4.25554 4.55186 4.64853 4.74269 4.96437 5.37804 5.47710 5.54475 5.88547 6.23525 6.35987 7.20803 7.30685 8.49459 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.065779 B = 0.009909 C = 0.009673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.566598 B = 2824.925294 C = 2894.038331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.236 3.764 3 H 0.075 0.925 4 C -0.628 4.628 5 H 0.024 0.976 6 C 0.002 3.998 7 N -0.916 5.916 8 Si 1.070 2.930 9 H -0.288 1.288 10 H -0.218 1.218 11 H -0.264 1.264 12 N -0.247 5.247 13 C 0.041 3.959 14 C 0.009 3.991 15 C 0.332 3.668 16 N -0.424 5.424 17 N -0.262 5.262 18 N -0.099 5.099 19 H 0.085 0.915 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.257 0.743 23 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.194 3.662 6.266 9.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.136 3.864 3 H 0.093 0.907 4 C -0.666 4.666 5 H 0.042 0.958 6 C -0.200 4.200 7 N -0.549 5.549 8 Si 0.889 3.111 9 H -0.214 1.214 10 H -0.142 1.142 11 H -0.189 1.189 12 N -0.036 5.036 13 C -0.118 4.118 14 C -0.132 4.132 15 C 0.014 3.986 16 N -0.102 5.102 17 N -0.130 5.130 18 N -0.079 5.079 19 H 0.103 0.897 20 H 0.093 0.907 21 H 0.095 0.905 22 H 0.066 0.934 23 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -5.666 4.523 6.353 9.640 hybrid contribution 0.311 -2.057 0.223 2.093 sum -5.354 2.466 6.577 8.832 Atomic orbital electron populations 1.22571 0.92050 1.03895 1.03844 1.20082 0.94788 0.93916 0.77586 0.90698 1.22094 1.42647 1.09753 0.92138 0.95756 1.27167 0.93466 1.08544 0.90841 1.70996 1.41691 1.09787 1.32443 0.83821 0.79925 0.69794 0.77596 1.21361 1.14150 1.18920 1.47885 1.15004 1.20402 1.20297 1.24033 1.02495 0.92053 0.93221 1.16861 0.98690 0.99198 0.98484 1.23350 0.92909 0.90959 0.91375 1.81259 1.08611 1.10830 1.09543 1.75449 1.20422 1.03268 1.13859 1.78218 1.05804 1.21553 1.02348 0.89689 0.90713 0.90515 0.93366 0.75017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.86 8.63 71.98 0.62 -4.24 14 2 C 0.24 8.96 2.80 44.24 0.12 9.08 14 3 H 0.08 2.80 6.80 -2.39 -0.02 2.78 14 4 C -0.63 -30.57 9.10 25.60 0.23 -30.34 14 5 H 0.02 1.37 8.06 -2.91 -0.02 1.34 14 6 C 0.00 0.08 5.30 84.65 0.45 0.53 14 7 N -0.92 -51.12 13.70 21.45 0.29 -50.83 14 8 Si 1.07 40.51 26.29 68.60 1.80 42.32 14 9 H -0.29 -11.46 7.11 99.48 0.71 -10.76 14 10 H -0.22 -6.51 5.75 99.48 0.57 -5.93 14 11 H -0.26 -9.54 7.11 99.48 0.71 -8.84 14 12 N -0.25 -9.13 3.22 -329.75 -1.06 -10.19 14 13 C 0.04 1.25 10.62 83.94 0.89 2.14 14 14 C 0.01 0.28 7.00 39.64 0.28 0.56 14 15 C 0.33 10.18 15.92 88.33 1.41 11.59 14 16 N -0.42 -13.61 18.54 19.00 0.35 -13.26 14 17 N -0.26 -9.99 12.46 -52.63 -0.66 -10.65 14 18 N -0.10 -4.01 13.13 37.02 0.49 -3.52 14 19 H 0.08 2.57 4.87 -2.39 -0.01 2.56 14 20 H 0.07 1.99 6.84 -2.39 -0.02 1.98 14 21 H 0.08 1.77 8.14 -2.39 -0.02 1.76 14 22 H 0.26 14.74 8.73 -92.71 -0.81 13.93 14 23 H 0.23 5.12 7.13 -2.91 -0.02 5.10 14 Total: -1.00 -59.17 217.25 6.29 -52.88 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.07 Total: 3.92 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 4.00 Total: -10.67 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -0.59 Total: -88.45 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.80 Total: 42.32 kcal Total: -59.17 6.29 -52.88 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010575.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.142 kcal (2) G-P(sol) polarization free energy of solvation -59.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds