Wall clock time and date at job start Mon Mar 30 2020 02:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00050 * 2 1 4 4 H 1.48507 * 109.47211 * 270.00131 * 3 2 1 5 5 H 1.48507 * 109.47274 * 30.00012 * 3 2 1 6 6 H 1.48494 * 109.47344 * 149.99955 * 3 2 1 7 7 C 1.37876 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00527 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99572 * 179.97438 * 7 2 1 10 10 H 1.08993 * 109.39322 * 60.12632 * 9 7 2 11 11 C 1.53126 * 109.43042 * 180.02562 * 9 7 2 12 12 C 1.53493 * 109.30791 * 189.98348 * 11 9 7 13 13 C 1.50711 * 108.05595 * 311.29920 * 12 11 9 14 14 C 1.33864 * 128.67726 * 195.76222 * 13 12 11 15 15 N 1.34421 * 107.79843 * 179.89493 * 14 13 12 16 16 C 1.30788 * 109.32096 * 359.97438 * 15 14 13 17 17 N 1.34408 * 108.55142 * 0.30110 * 16 15 14 18 18 C 1.46467 * 128.44325 * 180.16177 * 17 16 15 19 19 H 0.97001 * 119.99909 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.49840 * 70.03229 * 11 9 7 21 21 H 1.08998 * 109.49368 * 309.93361 * 11 9 7 22 22 H 1.08990 * 109.74376 * 191.64933 * 12 11 9 23 23 H 1.09000 * 109.77998 * 70.95788 * 12 11 9 24 24 H 1.08007 * 126.09745 * 359.88600 * 14 13 12 25 25 H 1.08002 * 125.72007 * 180.02562 * 16 15 14 26 26 H 1.09010 * 109.79560 * 77.12018 * 18 17 16 27 27 H 1.08998 * 109.59982 * 316.68797 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8738 -0.6813 0.8910 11 6 4.0210 -2.6380 0.0001 12 6 5.5353 -2.6419 0.2506 13 6 6.1653 -1.6371 -0.6794 14 6 7.4536 -1.5028 -1.0174 15 7 7.5479 -0.4728 -1.8759 16 6 6.3585 0.0319 -2.0786 17 7 5.4695 -0.6610 -1.3465 18 6 4.0209 -0.4671 -1.2501 19 1 -0.4850 0.8401 0.0004 20 1 3.8108 -3.0981 -0.9654 21 1 3.5204 -3.2003 0.7883 22 1 5.9393 -3.6340 0.0493 23 1 5.7388 -2.3645 1.2849 24 1 8.2713 -2.1131 -0.6632 25 1 6.1298 0.8684 -2.7224 26 1 3.5340 -0.8758 -2.1356 27 1 3.7991 0.5970 -1.1693 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261017488.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:02 Heat of formation + Delta-G solvation = 52.815496 kcal Electronic energy + Delta-G solvation = -11993.051514 eV Core-core repulsion = 9944.500895 eV Total energy + Delta-G solvation = -2048.550619 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.78140 -36.41832 -32.72517 -32.42765 -30.13139 -27.43926 -25.03851 -23.30682 -20.95844 -20.64109 -18.34826 -17.07812 -16.62983 -15.18503 -14.56610 -13.86194 -13.51370 -13.48292 -13.32037 -12.84267 -12.64198 -12.01772 -11.53688 -11.14277 -10.67941 -10.35993 -10.02255 -9.66601 -9.58448 -9.35351 -8.90376 -8.81446 -7.88439 -6.32790 -4.35144 2.57107 3.02283 3.16443 3.18581 3.44976 3.56284 4.14748 4.93252 5.06973 5.20256 5.34625 5.51690 5.65524 5.75700 5.93465 6.01024 6.10256 6.20474 6.45289 6.48567 6.86814 6.96724 7.10551 7.21225 7.42933 7.75329 8.25795 8.49589 8.72139 9.26503 10.79851 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.050029 B = 0.014183 C = 0.011765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.535726 B = 1973.657088 C = 2379.311462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.082 0.918 9 C 0.006 3.994 10 H 0.037 0.963 11 C -0.105 4.105 12 C -0.051 4.051 13 C -0.011 4.011 14 C -0.045 4.045 15 N -0.507 5.507 16 C 0.165 3.835 17 N -0.444 5.444 18 C 0.091 3.909 19 H 0.268 0.732 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.163 0.837 25 H 0.197 0.803 26 H 0.087 0.913 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.459 -1.639 -0.972 8.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.129 4.129 3 Si 0.700 3.300 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.100 0.900 9 C -0.013 4.013 10 H 0.056 0.944 11 C -0.142 4.142 12 C -0.089 4.089 13 C -0.128 4.128 14 C -0.193 4.193 15 N -0.226 5.226 16 C -0.118 4.118 17 N -0.125 5.125 18 C -0.030 4.030 19 H 0.078 0.922 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.180 0.820 25 H 0.214 0.786 26 H 0.106 0.894 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.828 -1.177 -1.342 9.006 hybrid contribution -0.463 0.914 0.193 1.043 sum 8.365 -0.263 -1.149 8.448 Atomic orbital electron populations 1.69862 1.06164 1.27341 1.49136 1.25053 0.94783 0.98874 0.94199 0.87088 0.80276 0.84188 0.78407 1.20174 1.21318 1.18947 1.20930 0.87635 0.94980 1.52037 0.89952 1.19476 0.97446 0.92568 0.91811 0.94450 1.21576 0.92366 0.98365 1.01927 1.20329 0.96401 0.95480 0.96717 1.21286 0.92671 0.96304 1.02520 1.21713 0.94707 1.00341 1.02534 1.70388 1.22746 1.11253 1.18215 1.24655 0.84646 1.01316 1.01136 1.45848 1.09646 1.24074 1.32928 1.23102 0.74316 1.01760 1.03794 0.92185 0.92377 0.90985 0.90443 0.90590 0.81971 0.78641 0.89435 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.96 55.43 0.77 -24.79 15 2 C 0.07 2.00 5.45 -17.82 -0.10 1.91 15 3 Si 0.87 20.26 24.27 -169.99 -4.13 16.14 15 4 H -0.28 -6.12 6.95 56.52 0.39 -5.72 15 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.26 -6.07 6.51 56.52 0.37 -5.70 15 7 C -0.52 -13.43 9.11 -34.44 -0.31 -13.75 15 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 15 9 C 0.01 0.14 1.69 -91.54 -0.15 -0.02 15 10 H 0.04 0.86 7.17 -51.93 -0.37 0.49 15 11 C -0.10 -1.93 5.20 -26.41 -0.14 -2.07 15 12 C -0.05 -0.81 6.31 -27.62 -0.17 -0.99 15 13 C -0.01 -0.20 6.57 -81.73 -0.54 -0.74 15 14 C -0.05 -0.80 11.84 -17.95 -0.21 -1.01 15 15 N -0.51 -9.68 11.27 -14.87 -0.17 -9.85 15 16 C 0.16 3.00 12.66 -90.71 -1.15 1.85 15 17 N -0.44 -8.61 3.13 -114.07 -0.36 -8.97 15 18 C 0.09 1.88 5.60 -3.90 -0.02 1.85 15 19 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 20 H 0.06 1.07 8.12 -51.93 -0.42 0.65 15 21 H 0.07 1.29 8.11 -51.93 -0.42 0.87 15 22 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.16 2.36 8.06 -52.48 -0.42 1.94 15 25 H 0.20 2.88 8.06 -52.49 -0.42 2.45 15 26 H 0.09 1.77 8.12 -51.92 -0.42 1.35 15 27 H 0.07 1.48 3.57 -51.93 -0.19 1.29 15 LS Contribution 221.43 15.07 3.34 3.34 Total: -1.00 -29.22 221.43 -6.45 -35.67 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -3.11 Total: 1.42 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -2.80 Total: -12.96 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.25 Total: -43.61 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.13 Total: 16.14 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -29.22 -6.45 -35.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261017488.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.487 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds