Wall clock time and date at job start Mon Mar 30 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00064 * 2 1 4 4 H 1.48502 * 109.46929 * 264.80056 * 3 2 1 5 5 H 1.48498 * 109.47162 * 24.80330 * 3 2 1 6 6 H 1.48506 * 109.46997 * 144.80336 * 3 2 1 7 7 C 1.37875 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00019 * 4.76568 * 7 2 1 9 9 C 1.50702 * 120.00131 * 184.75926 * 7 2 1 10 10 H 1.09004 * 109.39064 * 335.26161 * 9 7 2 11 11 C 1.53487 * 109.63067 * 215.27080 * 9 7 2 12 12 C 1.53496 * 109.36746 * 170.07286 * 11 9 7 13 13 C 1.50720 * 108.05010 * 48.75299 * 12 11 9 14 14 C 1.33857 * 128.67580 * 164.14658 * 13 12 11 15 15 N 1.34424 * 107.79542 * 180.14825 * 14 13 12 16 16 C 1.30780 * 109.32495 * 359.97438 * 15 14 13 17 17 N 1.34412 * 108.55063 * 359.95980 * 16 15 14 18 18 C 1.46469 * 128.44297 * 180.12570 * 17 16 15 19 19 H 0.97004 * 120.00070 * 0.02562 * 1 2 3 20 20 H 1.08992 * 109.44272 * 50.11870 * 11 9 7 21 21 H 1.09005 * 109.51761 * 290.07444 * 11 9 7 22 22 H 1.08998 * 109.74354 * 289.11861 * 12 11 9 23 23 H 1.08992 * 109.78576 * 168.41482 * 12 11 9 24 24 H 1.08003 * 126.10138 * 0.12746 * 14 13 12 25 25 H 1.07995 * 125.72405 * 179.97438 * 16 15 14 26 26 H 1.08999 * 109.60137 * 282.48028 * 18 17 16 27 27 H 1.08996 * 109.60283 * 42.79627 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6065 1.9830 -1.3943 5 1 1.3960 2.6819 0.5873 6 1 3.4875 1.4743 0.8070 7 6 2.0045 -1.1940 0.0005 8 1 1.4673 -2.1278 -0.0768 9 6 3.5076 -1.1963 0.1088 10 1 3.8981 -0.2461 -0.2557 11 6 4.0836 -2.3421 -0.7345 12 6 5.6087 -2.1921 -0.8230 13 6 6.1373 -1.9651 0.5701 14 6 7.3959 -2.0670 1.0141 15 7 7.3933 -1.7766 2.3266 16 6 6.1731 -1.4984 2.7059 17 7 5.3598 -1.6032 1.6408 18 6 3.9131 -1.3843 1.5747 19 1 -0.4850 0.8401 -0.0004 20 1 3.6557 -2.3059 -1.7363 21 1 3.8383 -3.2964 -0.2683 22 1 5.8588 -1.3401 -1.4551 23 1 6.0452 -3.1000 -1.2391 24 1 8.2594 -2.3350 0.4233 25 1 5.8697 -1.2293 3.7068 26 1 3.3933 -2.2481 1.9890 27 1 3.6518 -0.4925 2.1443 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261017489.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:04 Heat of formation + Delta-G solvation = 28.170894 kcal Electronic energy + Delta-G solvation = -11906.808250 eV Core-core repulsion = 9857.188960 eV Total energy + Delta-G solvation = -2049.619289 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.12524 -37.87509 -34.61276 -33.78686 -31.72616 -28.80402 -26.88968 -24.59853 -22.40712 -22.12179 -19.85094 -19.06424 -17.85555 -16.63068 -16.30737 -15.26946 -15.12104 -14.79825 -14.59338 -14.56263 -13.98198 -13.57414 -13.15475 -12.83413 -12.55519 -11.95060 -11.64973 -11.40336 -11.28655 -10.92440 -10.74906 -10.35838 -9.20260 -8.37441 -6.44475 1.23419 1.29845 1.33984 1.41205 2.04638 2.23182 2.26375 2.98010 3.80665 3.92412 3.98015 4.01713 4.24099 4.46014 4.53211 4.63668 4.71944 4.91774 4.96401 5.05675 5.40655 5.43463 5.52620 5.61279 5.89992 6.21646 6.40312 6.66013 7.16227 7.23373 8.78416 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.051682 B = 0.012514 C = 0.011663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.640758 B = 2236.973310 C = 2400.108579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.516 4.516 8 H 0.042 0.958 9 C 0.007 3.993 10 H 0.036 0.964 11 C -0.107 4.107 12 C -0.043 4.043 13 C -0.030 4.030 14 C -0.049 4.049 15 N -0.531 5.531 16 C 0.164 3.836 17 N -0.455 5.455 18 C 0.109 3.891 19 H 0.269 0.731 20 H 0.070 0.930 21 H 0.051 0.949 22 H 0.085 0.915 23 H 0.107 0.893 24 H 0.188 0.812 25 H 0.227 0.773 26 H 0.080 0.920 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.325 -1.382 0.493 10.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.554 4.554 8 H 0.061 0.939 9 C -0.013 4.013 10 H 0.054 0.946 11 C -0.145 4.145 12 C -0.081 4.081 13 C -0.146 4.146 14 C -0.196 4.196 15 N -0.251 5.251 16 C -0.118 4.118 17 N -0.137 5.137 18 C -0.013 4.013 19 H 0.078 0.922 20 H 0.089 0.911 21 H 0.070 0.930 22 H 0.104 0.896 23 H 0.125 0.875 24 H 0.205 0.795 25 H 0.243 0.757 26 H 0.098 0.902 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.676 -1.239 1.036 10.798 hybrid contribution -1.051 0.798 -0.305 1.354 sum 9.626 -0.441 0.731 9.664 Atomic orbital electron populations 1.70018 1.08106 1.28375 1.51096 1.25859 0.95317 1.02539 0.93726 0.85889 0.78994 0.79366 0.79510 1.19161 1.21214 1.17936 1.21012 0.90335 0.93460 1.50635 0.93923 1.19428 0.94799 0.96548 0.90496 0.94594 1.21687 0.94016 0.97994 1.00775 1.20358 0.94878 1.03658 0.89228 1.21676 0.92052 1.08569 0.92282 1.22173 0.96337 1.09175 0.91910 1.70419 1.20981 1.20281 1.13368 1.25305 0.85523 1.05800 0.95135 1.45921 1.09594 1.49158 1.09020 1.22550 0.74832 1.01995 1.01897 0.92166 0.91083 0.93007 0.89639 0.87502 0.79492 0.75710 0.90163 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.78 13.96 21.45 0.30 -54.48 15 2 C 0.02 1.34 5.47 84.65 0.46 1.80 15 3 Si 0.94 41.48 26.98 68.60 1.85 43.33 15 4 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 15 6 H -0.26 -10.66 6.76 99.48 0.67 -9.99 15 7 C -0.52 -26.76 8.84 25.60 0.23 -26.53 15 8 H 0.04 2.46 8.06 -2.91 -0.02 2.44 15 9 C 0.01 0.28 1.78 -11.29 -0.02 0.26 15 10 H 0.04 1.55 5.25 -2.39 -0.01 1.53 15 11 C -0.11 -3.81 5.26 30.92 0.16 -3.64 15 12 C -0.04 -1.26 6.32 30.02 0.19 -1.07 15 13 C -0.03 -1.01 6.57 40.73 0.27 -0.74 15 14 C -0.05 -1.58 11.84 83.30 0.99 -0.60 15 15 N -0.53 -18.67 11.27 -200.97 -2.26 -20.93 15 16 C 0.16 5.38 12.66 180.38 2.28 7.67 15 17 N -0.46 -16.10 3.13 -514.93 -1.61 -17.72 15 18 C 0.11 4.15 6.27 86.47 0.54 4.69 15 19 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 20 H 0.07 2.52 8.11 -2.39 -0.02 2.50 15 21 H 0.05 1.86 8.12 -2.38 -0.02 1.84 15 22 H 0.09 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.11 2.49 8.14 -2.39 -0.02 2.47 15 24 H 0.19 4.81 8.06 -2.91 -0.02 4.78 15 25 H 0.23 5.63 8.06 -2.91 -0.02 5.61 15 26 H 0.08 3.04 8.12 -2.39 -0.02 3.02 15 27 H 0.08 2.95 8.08 -2.39 -0.02 2.94 15 Total: -1.00 -61.65 227.78 4.49 -57.16 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.12 Total: 10.80 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 5.10 Total: -18.16 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -3.58 Total: -93.13 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.85 Total: 43.33 kcal Total: -61.65 4.49 -57.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261017489.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.328 kcal (2) G-P(sol) polarization free energy of solvation -61.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds