Wall clock time and date at job start Mon Mar 30 2020 01:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30434 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99597 * 3 2 1 5 5 H 1.48496 * 109.47530 * 30.00029 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99913 * 3 2 1 7 7 C 1.40695 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00351 * 179.72479 * 7 2 1 9 9 C 1.39505 * 119.99703 * 0.02562 * 7 2 1 10 10 N 1.36993 * 126.77973 * 359.40630 * 9 7 2 11 11 H 0.96998 * 125.93836 * 0.02562 * 10 9 7 12 12 N 1.39789 * 108.12635 * 179.84921 * 10 9 7 13 13 C 1.31248 * 109.70642 * 0.43120 * 12 10 9 14 14 C 1.40139 * 108.79005 * 359.74316 * 13 12 10 15 15 C 1.46112 * 110.91239 * 179.97438 * 14 13 12 16 16 O 1.21388 * 125.90928 * 179.97438 * 15 14 13 17 17 C 1.50974 * 108.18243 * 359.97438 * 15 14 13 18 18 C 1.51114 * 141.91983 * 179.73513 * 13 12 10 19 19 H 0.97009 * 119.99583 * 0.02562 * 1 2 3 20 20 H 1.09004 * 110.24858 * 241.00948 * 17 15 14 21 21 H 1.09000 * 110.25252 * 118.99097 * 17 15 14 22 22 H 1.09001 * 110.11575 * 299.18341 * 18 13 12 23 23 H 1.09009 * 110.11377 * 60.83176 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3043 0.0000 0.0000 3 14 2.2384 1.6177 0.0000 4 1 2.4859 2.0463 -1.4001 5 1 1.4359 2.6527 0.7000 6 1 3.5359 1.4401 0.7001 7 6 2.0078 -1.2185 0.0005 8 1 3.0877 -1.2185 -0.0039 9 6 1.3102 -2.4266 0.0005 10 7 -0.0501 -2.5882 0.0114 11 1 -0.7080 -1.8756 0.0203 12 7 -0.3253 -3.9588 0.0035 13 6 0.7991 -4.6359 -0.0023 14 6 1.8702 -3.7322 -0.0044 15 6 3.1489 -4.4391 -0.0103 16 8 4.2476 -3.9231 -0.0136 17 6 2.8672 -5.9224 -0.0115 18 6 1.3372 -6.0479 -0.0074 19 1 -0.4850 0.8402 -0.0004 20 1 3.2871 -6.3868 0.8808 21 1 3.2804 -6.3842 -0.9082 22 1 1.0078 -6.5779 0.8863 23 1 1.0010 -6.5740 -0.9011 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261051403.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:41 Heat of formation + Delta-G solvation = -13.813767 kcal Electronic energy + Delta-G solvation = -11453.985164 eV Core-core repulsion = 9266.712188 eV Total energy + Delta-G solvation = -2187.272976 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.52781 -39.07637 -36.45337 -35.15875 -31.57318 -29.90726 -27.84404 -25.83717 -23.13359 -20.80761 -20.12075 -18.86644 -17.39564 -16.55830 -16.49186 -15.64785 -15.50120 -14.53192 -14.36248 -14.06076 -13.94695 -13.22511 -13.10777 -12.96044 -12.65677 -12.02160 -11.93860 -11.49002 -11.10003 -10.07715 -9.99899 -9.32774 -9.19321 -6.98153 0.78309 1.31448 1.34801 1.48879 1.70756 2.06759 2.40122 2.56451 3.11490 3.35122 4.10425 4.34558 4.45774 4.68582 4.84142 4.88484 5.12389 5.21376 5.23089 5.46323 5.63036 6.12323 6.27505 6.41460 7.19995 7.22002 7.50739 7.87772 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.050420 B = 0.013170 C = 0.010523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.205854 B = 2125.563736 C = 2660.219008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 1.015 2.985 4 H -0.254 1.254 5 H -0.250 1.250 6 H -0.260 1.260 7 C -0.449 4.449 8 H 0.093 0.907 9 C 0.287 3.713 10 N -0.510 5.510 11 H 0.440 0.560 12 N -0.375 5.375 13 C 0.088 3.912 14 C -0.518 4.518 15 C 0.413 3.587 16 O -0.559 6.559 17 C -0.142 4.142 18 C -0.016 4.016 19 H 0.315 0.685 20 H 0.123 0.877 21 H 0.123 0.877 22 H 0.110 0.890 23 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -2.826 -0.007 2.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.833 3.167 4 H -0.178 1.178 5 H -0.174 1.174 6 H -0.184 1.184 7 C -0.484 4.484 8 H 0.111 0.889 9 C 0.163 3.837 10 N -0.230 5.230 11 H 0.294 0.706 12 N -0.196 5.196 13 C -0.082 4.082 14 C -0.530 4.530 15 C 0.302 3.698 16 O -0.446 6.446 17 C -0.180 4.180 18 C -0.055 4.055 19 H 0.127 0.873 20 H 0.141 0.859 21 H 0.141 0.859 22 H 0.128 0.872 23 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.312 -2.598 0.000 2.617 hybrid contribution 0.474 1.382 -0.011 1.461 sum 0.162 -1.216 -0.011 1.227 Atomic orbital electron populations 1.68614 1.09409 1.33431 1.33652 1.27318 0.95787 1.05796 0.89120 0.84683 0.78596 0.73146 0.80292 1.17773 1.17372 1.18424 1.19515 0.95939 0.89348 1.43586 0.88874 1.18876 0.83983 0.93776 0.87054 1.47184 1.05505 1.04507 1.65828 0.70557 1.76268 1.22324 0.88755 1.32259 1.23498 0.90560 0.99098 0.95047 1.21652 0.98097 0.93045 1.40197 1.21839 0.85447 0.92607 0.69875 1.90374 1.29924 1.77216 1.47077 1.22200 0.96484 0.92891 1.06392 1.20340 0.92644 0.87109 1.05362 0.87255 0.85894 0.85904 0.87216 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.58 10.73 21.96 0.24 -38.34 14 2 C 0.04 1.81 5.51 85.50 0.47 2.28 14 3 Si 1.02 35.84 29.57 68.60 2.03 37.87 14 4 H -0.25 -8.58 7.11 99.48 0.71 -7.88 14 5 H -0.25 -7.92 7.11 99.48 0.71 -7.21 14 6 H -0.26 -9.43 7.11 99.48 0.71 -8.73 14 7 C -0.45 -24.79 9.37 23.18 0.22 -24.57 14 8 H 0.09 5.26 7.86 -2.92 -0.02 5.24 14 9 C 0.29 16.48 6.82 39.59 0.27 16.75 14 10 N -0.51 -27.93 7.06 -50.61 -0.36 -28.29 14 11 H 0.44 23.31 6.33 -213.52 -1.35 21.96 14 12 N -0.37 -19.44 12.61 -46.69 -0.59 -20.03 14 13 C 0.09 4.13 8.13 43.24 0.35 4.48 14 14 C -0.52 -27.71 6.87 -19.82 -0.14 -27.84 14 15 C 0.41 19.71 7.72 27.82 0.21 19.93 14 16 O -0.56 -30.30 18.03 -3.36 -0.06 -30.36 14 17 C -0.14 -4.47 6.86 30.11 0.21 -4.26 14 18 C -0.02 -0.49 6.81 30.15 0.21 -0.28 14 19 H 0.31 12.73 8.29 -92.70 -0.77 11.96 14 20 H 0.12 3.14 8.14 -2.38 -0.02 3.12 14 21 H 0.12 3.14 8.14 -2.39 -0.02 3.12 14 22 H 0.11 2.81 8.14 -2.39 -0.02 2.79 14 23 H 0.11 2.81 8.14 -2.38 -0.02 2.79 14 Total: -1.00 -68.47 212.45 2.96 -65.51 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -0.10 Total: 27.15 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 1.80 Total: -13.51 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -0.71 Total: -86.66 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.06 Total: -30.36 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -68.47 2.96 -65.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261051403.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.698 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds