Wall clock time and date at job start Mon Mar 30 2020 02:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00291 * 2 1 4 4 H 1.48502 * 109.47454 * 266.26941 * 3 2 1 5 5 H 1.48507 * 109.47203 * 26.26882 * 3 2 1 6 6 H 1.48501 * 109.47117 * 146.27033 * 3 2 1 7 7 C 1.37880 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00215 * 353.83764 * 7 2 1 9 9 C 1.50704 * 119.99732 * 173.84058 * 7 2 1 10 10 H 1.09000 * 109.77894 * 354.23115 * 9 7 2 11 11 C 1.53492 * 109.74323 * 233.53243 * 9 7 2 12 12 C 1.53122 * 109.30187 * 191.64387 * 11 9 7 13 13 C 1.53281 * 109.71141 * 69.91796 * 12 11 9 14 14 N 1.46477 * 108.69286 * 309.25621 * 13 12 11 15 15 C 1.34408 * 128.44007 * 197.28768 * 14 13 12 16 16 N 1.30786 * 108.54941 * 179.85318 * 15 14 13 17 17 C 1.34423 * 109.32497 * 0.04257 * 16 15 14 18 18 C 1.33865 * 107.79377 * 0.02562 * 17 16 15 19 19 H 0.97005 * 119.99753 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.49882 * 311.58470 * 11 9 7 21 21 H 1.08995 * 109.50204 * 71.65910 * 11 9 7 22 22 H 1.09002 * 109.43001 * 189.98595 * 12 11 9 23 23 H 1.08995 * 109.42839 * 309.88882 * 12 11 9 24 24 H 1.08994 * 109.59268 * 189.49977 * 13 12 11 25 25 H 1.08998 * 109.60978 * 69.02090 * 13 12 11 26 26 H 1.07997 * 125.72567 * 359.81712 * 15 14 13 27 27 H 1.07998 * 126.10464 * 179.74245 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5756 2.0008 -1.3971 5 1 1.4094 2.6742 0.6197 6 1 3.5051 1.4641 0.7774 7 6 2.0045 -1.1941 -0.0005 8 1 1.4691 -2.1267 0.0994 9 6 3.5050 -1.1979 -0.1406 10 1 3.8601 -0.1852 -0.3316 11 6 3.9154 -2.1184 -1.2982 12 6 5.4289 -2.3460 -1.2517 13 6 5.7839 -3.2160 -0.0406 14 7 5.1580 -2.6391 1.1514 15 6 5.4474 -2.8724 2.4431 16 7 4.6507 -2.1479 3.1854 17 6 3.8318 -1.4341 2.3936 18 6 4.1327 -1.7282 1.1228 19 1 -0.4850 0.8401 -0.0004 20 1 3.4007 -3.0745 -1.2028 21 1 3.6459 -1.6531 -2.2463 22 1 5.7483 -2.8482 -2.1649 23 1 5.9376 -1.3856 -1.1691 24 1 6.8659 -3.2381 0.0889 25 1 5.4111 -4.2284 -0.1956 26 1 6.2094 -3.5457 2.8069 27 1 3.0647 -0.7494 2.7239 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055710.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:58 Heat of formation + Delta-G solvation = 50.383475 kcal Electronic energy + Delta-G solvation = -12029.296106 eV Core-core repulsion = 9980.640026 eV Total energy + Delta-G solvation = -2048.656080 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.45938 -36.09912 -33.47483 -31.53052 -29.81334 -27.20479 -25.45919 -22.15134 -21.33558 -20.43304 -18.25585 -17.06633 -16.39632 -15.16596 -14.30161 -13.74340 -13.44452 -13.22151 -12.98642 -12.58841 -12.47623 -11.87417 -11.62506 -10.93503 -10.73006 -10.35165 -9.86391 -9.68195 -9.46850 -9.16911 -8.74957 -8.64418 -7.36657 -6.15645 -4.16512 2.92864 3.24766 3.35194 3.38416 3.49145 4.03690 4.35574 4.92314 5.02371 5.14015 5.28309 5.34592 5.68249 5.84364 5.90686 6.02755 6.27098 6.40664 6.51102 6.68305 6.95266 7.03914 7.27270 7.61892 7.71107 8.02797 8.43422 8.86773 8.92939 9.45506 10.96990 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.040241 B = 0.015497 C = 0.013216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.632762 B = 1806.413316 C = 2118.061739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.872 3.128 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.502 4.502 8 H 0.076 0.924 9 C 0.079 3.921 10 H 0.052 0.948 11 C -0.114 4.114 12 C -0.138 4.138 13 C 0.111 3.889 14 N -0.468 5.468 15 C 0.143 3.857 16 N -0.503 5.503 17 C -0.034 4.034 18 C 0.024 3.976 19 H 0.266 0.734 20 H 0.060 0.940 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.191 0.809 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.289 -3.760 -2.493 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.699 3.301 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.540 4.540 8 H 0.094 0.906 9 C 0.059 3.941 10 H 0.070 0.930 11 C -0.152 4.152 12 C -0.175 4.175 13 C -0.012 4.012 14 N -0.154 5.154 15 C -0.137 4.137 16 N -0.223 5.223 17 C -0.179 4.179 18 C -0.090 4.090 19 H 0.076 0.924 20 H 0.079 0.921 21 H 0.085 0.915 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.208 0.792 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.183 -3.695 -1.723 11.903 hybrid contribution 0.417 0.726 -0.771 1.138 sum 11.600 -2.969 -2.494 12.231 Atomic orbital electron populations 1.69889 1.06310 1.27239 1.49406 1.25081 0.94733 0.98856 0.93954 0.86915 0.80599 0.83774 0.78833 1.20137 1.21200 1.18614 1.20743 0.87727 0.94899 1.50653 0.90627 1.18030 0.96104 0.94295 0.85673 0.93024 1.21849 0.91583 1.01218 1.00538 1.21980 0.99780 0.99720 0.96068 1.21801 0.97335 0.97678 0.84384 1.45505 1.28520 1.34616 1.06772 1.24439 1.04239 1.05341 0.79703 1.70360 1.07726 1.10217 1.33985 1.21680 1.02446 1.04682 0.89078 1.22543 0.91074 0.95290 1.00076 0.92379 0.92138 0.91538 0.90733 0.91582 0.90338 0.90632 0.79239 0.81883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.96 55.43 0.77 -25.75 15 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 15 3 Si 0.87 20.92 26.95 -169.99 -4.58 16.34 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.26 -6.17 6.81 56.52 0.38 -5.79 15 7 C -0.50 -13.67 8.54 -34.44 -0.29 -13.96 15 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 15 9 C 0.08 1.82 2.40 -92.66 -0.22 1.60 15 10 H 0.05 1.21 4.89 -51.93 -0.25 0.95 15 11 C -0.11 -2.14 5.27 -26.41 -0.14 -2.28 15 12 C -0.14 -1.99 5.92 -26.52 -0.16 -2.15 15 13 C 0.11 1.55 7.00 -3.91 -0.03 1.52 15 14 N -0.47 -8.74 3.13 -114.09 -0.36 -9.10 15 15 C 0.14 2.64 12.66 -90.71 -1.15 1.49 15 16 N -0.50 -11.12 11.27 -14.87 -0.17 -11.29 15 17 C -0.03 -0.80 11.42 -17.95 -0.20 -1.01 15 18 C 0.02 0.54 6.08 -81.73 -0.50 0.05 15 19 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 20 H 0.06 1.18 8.08 -51.93 -0.42 0.76 15 21 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.07 0.97 8.11 -51.93 -0.42 0.55 15 24 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 15 26 H 0.19 2.57 8.06 -52.49 -0.42 2.15 15 27 H 0.16 3.96 8.06 -52.49 -0.42 3.54 15 LS Contribution 227.21 15.07 3.42 3.42 Total: -1.00 -31.36 227.21 -6.90 -38.27 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -3.21 Total: 0.82 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.79 Total: -12.71 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.25 Total: -46.13 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.58 Total: 16.34 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -31.36 -6.90 -38.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055710.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.649 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds