Wall clock time and date at job start Mon Mar 30 2020 02:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00291 * 2 1 4 4 H 1.48502 * 109.47454 * 266.26941 * 3 2 1 5 5 H 1.48507 * 109.47203 * 26.26882 * 3 2 1 6 6 H 1.48501 * 109.47117 * 146.27033 * 3 2 1 7 7 C 1.37880 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00215 * 353.83764 * 7 2 1 9 9 C 1.50704 * 119.99732 * 173.84058 * 7 2 1 10 10 H 1.09000 * 109.77894 * 354.23115 * 9 7 2 11 11 C 1.53492 * 109.74323 * 233.53243 * 9 7 2 12 12 C 1.53122 * 109.30187 * 191.64387 * 11 9 7 13 13 C 1.53281 * 109.71141 * 69.91796 * 12 11 9 14 14 N 1.46477 * 108.69286 * 309.25621 * 13 12 11 15 15 C 1.34408 * 128.44007 * 197.28768 * 14 13 12 16 16 N 1.30786 * 108.54941 * 179.85318 * 15 14 13 17 17 C 1.34423 * 109.32497 * 0.04257 * 16 15 14 18 18 C 1.33865 * 107.79377 * 0.02562 * 17 16 15 19 19 H 0.97005 * 119.99753 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.49882 * 311.58470 * 11 9 7 21 21 H 1.08995 * 109.50204 * 71.65910 * 11 9 7 22 22 H 1.09002 * 109.43001 * 189.98595 * 12 11 9 23 23 H 1.08995 * 109.42839 * 309.88882 * 12 11 9 24 24 H 1.08994 * 109.59268 * 189.49977 * 13 12 11 25 25 H 1.08998 * 109.60978 * 69.02090 * 13 12 11 26 26 H 1.07997 * 125.72567 * 359.81712 * 15 14 13 27 27 H 1.07998 * 126.10464 * 179.74245 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5756 2.0008 -1.3971 5 1 1.4094 2.6742 0.6197 6 1 3.5051 1.4641 0.7774 7 6 2.0045 -1.1941 -0.0005 8 1 1.4691 -2.1267 0.0994 9 6 3.5050 -1.1979 -0.1406 10 1 3.8601 -0.1852 -0.3316 11 6 3.9154 -2.1184 -1.2982 12 6 5.4289 -2.3460 -1.2517 13 6 5.7839 -3.2160 -0.0406 14 7 5.1580 -2.6391 1.1514 15 6 5.4474 -2.8724 2.4431 16 7 4.6507 -2.1479 3.1854 17 6 3.8318 -1.4341 2.3936 18 6 4.1327 -1.7282 1.1228 19 1 -0.4850 0.8401 -0.0004 20 1 3.4007 -3.0745 -1.2028 21 1 3.6459 -1.6531 -2.2463 22 1 5.7483 -2.8482 -2.1649 23 1 5.9376 -1.3856 -1.1691 24 1 6.8659 -3.2381 0.0889 25 1 5.4111 -4.2284 -0.1956 26 1 6.2094 -3.5457 2.8069 27 1 3.0647 -0.7494 2.7239 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055710.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:58 Heat of formation + Delta-G solvation = 30.377263 kcal Electronic energy + Delta-G solvation = -12030.163640 eV Core-core repulsion = 9980.640026 eV Total energy + Delta-G solvation = -2049.523614 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.01143 -37.58564 -35.28487 -33.39000 -31.32492 -28.86412 -27.13430 -23.79881 -22.83836 -22.01397 -19.78846 -19.12037 -17.87584 -16.61163 -16.20618 -15.30957 -14.92313 -14.80460 -14.46842 -14.26598 -14.15874 -13.47410 -13.22519 -12.79272 -12.18108 -11.85571 -11.73543 -11.43678 -11.30507 -10.88861 -10.69079 -10.21924 -9.07348 -8.32232 -6.36675 1.29750 1.34608 1.42685 1.47540 2.12389 2.31976 2.35519 3.03723 3.75578 3.95179 3.99165 4.12699 4.30584 4.51189 4.62319 4.65146 4.75219 4.92794 5.02401 5.13729 5.34409 5.41185 5.59152 5.73143 5.95139 6.26473 6.60418 6.71330 7.27950 7.29856 8.84834 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.040241 B = 0.015497 C = 0.013216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.632762 B = 1806.413316 C = 2118.061739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.020 3.980 3 Si 0.939 3.061 4 H -0.256 1.256 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.502 4.502 8 H 0.027 0.973 9 C 0.076 3.924 10 H 0.050 0.950 11 C -0.112 4.112 12 C -0.129 4.129 13 C 0.102 3.898 14 N -0.465 5.465 15 C 0.171 3.829 16 N -0.541 5.541 17 C -0.066 4.066 18 C 0.005 3.995 19 H 0.268 0.732 20 H 0.046 0.954 21 H 0.068 0.932 22 H 0.117 0.883 23 H 0.067 0.933 24 H 0.125 0.875 25 H 0.094 0.906 26 H 0.246 0.754 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.847 -4.480 -3.382 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.178 4.178 3 Si 0.763 3.237 4 H -0.180 1.180 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.540 4.540 8 H 0.046 0.954 9 C 0.056 3.944 10 H 0.068 0.932 11 C -0.151 4.151 12 C -0.167 4.167 13 C -0.019 4.019 14 N -0.149 5.149 15 C -0.111 4.111 16 N -0.261 5.261 17 C -0.211 4.211 18 C -0.110 4.110 19 H 0.077 0.923 20 H 0.065 0.935 21 H 0.087 0.913 22 H 0.135 0.865 23 H 0.086 0.914 24 H 0.143 0.857 25 H 0.112 0.888 26 H 0.262 0.738 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.767 -4.434 -2.645 15.643 hybrid contribution -0.672 0.790 -0.457 1.133 sum 14.095 -3.643 -3.102 14.885 Atomic orbital electron populations 1.70037 1.08204 1.28231 1.51835 1.25913 0.95422 1.02680 0.93812 0.85838 0.79125 0.78948 0.79776 1.18010 1.21330 1.18079 1.20912 0.90448 0.92950 1.49674 0.95449 1.17967 0.93016 0.95547 0.87884 0.93207 1.21724 0.95447 0.99350 0.98536 1.21949 0.95564 1.00711 0.98465 1.22293 0.99764 0.97869 0.81956 1.45724 1.27345 1.33346 1.08518 1.25465 1.03019 1.03409 0.79202 1.70302 1.08996 1.11754 1.35018 1.21545 1.03249 1.05837 0.90434 1.22151 0.92939 0.97013 0.98919 0.92318 0.93499 0.91344 0.86496 0.91408 0.85703 0.88818 0.73796 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.96 21.45 0.30 -58.48 15 2 C 0.02 1.14 5.47 84.66 0.46 1.61 15 3 Si 0.94 44.16 26.95 68.60 1.85 46.01 15 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 15 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 15 6 H -0.26 -11.74 6.81 99.48 0.68 -11.06 15 7 C -0.50 -28.52 8.54 25.60 0.22 -28.30 15 8 H 0.03 1.76 8.06 -2.91 -0.02 1.74 15 9 C 0.08 3.48 2.40 -12.12 -0.03 3.46 15 10 H 0.05 2.28 4.89 -2.39 -0.01 2.27 15 11 C -0.11 -4.06 5.27 30.80 0.16 -3.89 15 12 C -0.13 -3.15 5.92 30.73 0.18 -2.96 15 13 C 0.10 2.27 7.00 86.48 0.61 2.88 15 14 N -0.46 -15.79 3.13 -514.86 -1.61 -17.40 15 15 C 0.17 5.66 12.66 180.38 2.28 7.94 15 16 N -0.54 -23.35 11.27 -200.97 -2.26 -25.61 15 17 C -0.07 -3.19 11.42 83.30 0.95 -2.24 15 18 C 0.01 0.24 6.08 40.73 0.25 0.48 15 19 H 0.27 15.59 8.31 -92.70 -0.77 14.81 15 20 H 0.05 1.79 8.08 -2.39 -0.02 1.77 15 21 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 22 H 0.12 1.94 8.14 -2.39 -0.02 1.92 15 23 H 0.07 1.67 8.11 -2.39 -0.02 1.66 15 24 H 0.12 1.78 8.14 -2.39 -0.02 1.76 15 25 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 26 H 0.25 5.08 8.06 -2.91 -0.02 5.06 15 27 H 0.14 7.10 8.06 -2.91 -0.02 7.08 15 Total: -1.00 -72.96 227.21 4.48 -68.48 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.12 Total: 8.04 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 5.08 Total: -21.04 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -3.58 Total: -101.50 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.85 Total: 46.01 kcal Total: -72.96 4.48 -68.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055710.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.856 kcal (2) G-P(sol) polarization free energy of solvation -72.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds