Wall clock time and date at job start Mon Mar 30 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.39672 * 119.99876 * 2 1 4 4 C 1.38908 * 120.07266 * 179.97438 * 3 2 1 5 5 C 1.38103 * 119.92866 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.07045 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.92297 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47151 * 90.00176 * 7 6 5 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99694 * 180.27762 * 8 7 6 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 7 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 7 13 13 H 1.48494 * 109.47230 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47301 * 119.99669 * 12 10 8 15 15 H 1.48498 * 109.47430 * 239.99516 * 12 10 8 16 16 C 1.38285 * 120.15335 * 0.27090 * 6 5 4 17 17 C 1.38107 * 120.06832 * 359.45141 * 16 6 5 18 18 H 1.09005 * 109.47060 * 59.99760 * 1 2 3 19 19 H 1.08995 * 109.47207 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47101 * 300.00192 * 1 2 3 21 21 H 0.97002 * 119.99508 * 180.02562 * 2 1 3 22 22 H 1.07998 * 120.03846 * 0.02562 * 4 3 2 23 23 H 1.07995 * 119.96768 * 179.97438 * 5 4 3 24 24 H 1.09000 * 109.47088 * 329.99315 * 7 6 5 25 25 H 1.09007 * 109.46560 * 209.99820 * 7 6 5 26 26 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 27 27 H 1.07996 * 119.96896 * 179.70532 * 16 6 5 28 28 H 1.08002 * 120.03840 * 180.27583 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 3.5525 1.2114 0.0005 5 6 4.2400 2.4092 0.0011 6 6 3.5469 3.6059 0.0016 7 6 4.3005 4.9110 0.0028 8 6 4.5522 5.3470 -1.4177 9 1 4.2019 4.7395 -2.2391 10 6 5.2351 6.5181 -1.6685 11 7 5.6620 7.2577 -0.6682 12 14 5.5539 7.0546 -3.4291 13 1 4.9762 6.0554 -4.3634 14 1 4.9219 8.3775 -3.6657 15 1 7.0175 7.1573 -3.6581 16 6 2.1641 3.6078 0.0073 17 6 1.4705 2.4135 0.0010 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.9500 -0.8401 -0.0004 22 1 4.0943 0.2772 0.0005 23 1 5.3199 2.4113 0.0019 24 1 5.2527 4.7803 0.5170 25 1 3.7111 5.6703 0.5169 26 1 6.1427 8.0814 -0.8447 27 1 1.6259 4.5441 0.0125 28 1 0.3904 2.4156 0.0009 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138703.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:49 Heat of formation + Delta-G solvation = -4.985952 kcal Electronic energy + Delta-G solvation = -11094.531634 eV Core-core repulsion = 9108.900466 eV Total energy + Delta-G solvation = -1985.631167 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.24480 -36.78641 -34.95707 -32.13235 -31.63174 -28.70942 -26.55839 -24.56216 -23.19207 -21.49842 -18.49428 -18.23075 -16.92331 -16.54727 -15.75946 -15.04903 -14.93590 -14.60244 -14.41905 -14.13119 -13.45684 -13.18909 -12.99063 -12.76208 -12.55617 -12.38551 -11.62848 -11.58454 -11.36445 -10.58480 -10.58097 -9.68880 -8.30199 -7.95622 -6.30123 0.66766 0.88094 1.40149 1.40255 1.54475 2.41911 2.72757 3.12785 3.15493 4.12154 4.24334 4.45706 4.52498 4.74010 4.74396 4.78465 4.97811 5.03994 5.19916 5.37616 5.40617 5.55533 5.70101 5.81113 6.03539 6.22888 6.25297 6.59076 6.83380 7.00232 7.38298 8.92430 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.066113 B = 0.007906 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.418249 B = 3540.719060 C = 3608.886516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.753 5.753 3 C 0.190 3.810 4 C -0.192 4.192 5 C -0.090 4.090 6 C -0.125 4.125 7 C 0.063 3.937 8 C -0.526 4.526 9 H 0.052 0.948 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.967 3.033 13 H -0.266 1.266 14 H -0.276 1.276 15 H -0.275 1.275 16 C -0.091 4.091 17 C -0.195 4.195 18 H 0.046 0.954 19 H 0.099 0.901 20 H 0.048 0.952 21 H 0.407 0.593 22 H 0.140 0.860 23 H 0.112 0.888 24 H -0.002 1.002 25 H -0.002 1.002 26 H 0.265 0.735 27 H 0.110 0.890 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.758 -13.877 0.357 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.385 5.385 3 C 0.087 3.913 4 C -0.214 4.214 5 C -0.109 4.109 6 C -0.127 4.127 7 C 0.026 3.974 8 C -0.564 4.564 9 H 0.070 0.930 10 C -0.196 4.196 11 N -0.573 5.573 12 Si 0.791 3.209 13 H -0.190 1.190 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.110 4.110 17 C -0.218 4.218 18 H 0.064 0.936 19 H 0.117 0.883 20 H 0.067 0.933 21 H 0.242 0.758 22 H 0.158 0.842 23 H 0.130 0.870 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.901 -13.707 0.399 16.348 hybrid contribution 0.649 0.561 -0.617 1.057 sum -8.252 -13.146 -0.218 15.523 Atomic orbital electron populations 1.21631 0.79181 1.03703 1.00763 1.44366 1.06284 1.04375 1.83498 1.17796 0.91106 0.87086 0.95274 1.20702 0.92484 0.98086 1.10148 1.20852 0.99463 0.91844 0.98753 1.20177 0.94523 0.95848 1.02158 1.17994 0.93509 0.89984 0.95941 1.21482 1.35583 1.06588 0.92723 0.92964 1.25962 0.95334 0.96510 1.01843 1.70095 1.39276 1.14917 1.32982 0.85374 0.78051 0.78207 0.79272 1.19013 1.20104 1.20100 1.20853 0.93426 0.97874 0.98816 1.20705 0.99887 0.90729 1.10441 0.93563 0.88282 0.93305 0.75779 0.84212 0.87015 0.98342 0.98393 0.92642 0.87170 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 9.94 127.77 1.27 2.78 15 2 N -0.75 -16.62 5.89 -360.80 -2.12 -18.75 15 3 C 0.19 5.90 6.65 38.21 0.25 6.16 15 4 C -0.19 -6.39 9.90 22.40 0.22 -6.17 15 5 C -0.09 -3.74 9.69 22.25 0.22 -3.52 15 6 C -0.13 -5.91 5.07 -19.84 -0.10 -6.01 15 7 C 0.06 3.55 5.10 29.10 0.15 3.70 15 8 C -0.53 -31.38 9.09 25.60 0.23 -31.15 15 9 H 0.05 3.09 7.74 -2.91 -0.02 3.07 15 10 C 0.00 0.06 5.46 84.65 0.46 0.53 15 11 N -0.93 -57.84 13.29 21.45 0.28 -57.56 15 12 Si 0.97 45.57 29.54 68.60 2.03 47.60 15 13 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 16 C -0.09 -3.80 9.69 22.25 0.22 -3.58 15 17 C -0.20 -6.64 9.31 22.40 0.21 -6.43 15 18 H 0.05 0.80 7.95 -2.38 -0.02 0.78 15 19 H 0.10 1.00 8.14 -2.39 -0.02 0.98 15 20 H 0.05 0.82 7.95 -2.39 -0.02 0.80 15 21 H 0.41 7.06 8.84 -92.71 -0.82 6.24 15 22 H 0.14 3.69 8.06 -2.91 -0.02 3.67 15 23 H 0.11 4.57 8.06 -2.91 -0.02 4.55 15 24 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 15 25 H 0.00 -0.14 8.08 -2.38 -0.02 -0.15 15 26 H 0.26 15.29 8.31 -92.71 -0.77 14.52 15 27 H 0.11 4.56 8.06 -2.91 -0.02 4.54 15 28 H 0.14 3.81 6.73 -2.91 -0.02 3.79 15 Total: -1.00 -68.50 245.95 3.64 -64.86 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.32 Total: 7.56 kcal Atomic # 6 Polarization: -46.84 SS G_CDS: 3.13 Total: -43.71 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -1.84 Total: -76.31 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -68.50 3.64 -64.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138703.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.876 kcal (2) G-P(sol) polarization free energy of solvation -68.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds