Wall clock time and date at job start Mon Mar 30 2020 02:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48506 * 109.47184 * 239.99509 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99653 * 3 2 1 7 7 C 1.40059 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00159 * 180.28083 * 7 2 1 9 9 C 1.39955 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.39968 * 126.31670 * 0.02586 * 9 7 2 11 11 C 1.38534 * 106.95412 * 180.02562 * 10 9 7 12 12 C 1.36737 * 108.20512 * 0.06179 * 11 10 9 13 13 N 1.35482 * 109.01285 * 359.61478 * 12 11 10 14 14 H 0.97001 * 125.77655 * 180.41361 * 13 12 11 15 15 C 1.51117 * 122.84034 * 179.84113 * 12 11 10 16 16 C 1.53467 * 107.83311 * 344.08083 * 15 12 11 17 17 N 1.46926 * 109.69256 * 49.50950 * 16 15 12 18 18 C 1.47290 * 111.44626 * 288.09992 * 17 16 15 19 19 H 0.97005 * 120.00077 * 0.02562 * 1 2 3 20 20 H 1.08002 * 126.52748 * 0.02562 * 10 9 7 21 21 H 1.08997 * 109.78981 * 103.66712 * 15 12 11 22 22 H 1.09005 * 109.78390 * 224.44516 * 15 12 11 23 23 H 1.09003 * 109.43530 * 169.57790 * 16 15 12 24 24 H 1.09000 * 109.43984 * 289.48986 * 16 15 12 25 25 H 1.00898 * 111.00552 * 163.82164 * 17 16 15 26 26 H 1.09000 * 109.72579 * 291.70815 * 18 17 16 27 27 H 1.08998 * 109.69882 * 171.07399 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6966 1.2125 7 6 2.0089 -1.2129 0.0005 8 1 3.0889 -1.2129 0.0051 9 6 1.3091 -2.4250 0.0005 10 6 -0.0820 -2.5789 -0.0005 11 6 -0.3378 -3.9405 0.0005 12 6 0.8600 -4.6001 0.0035 13 7 1.8645 -3.6911 -0.0042 14 1 2.8130 -3.8941 -0.0097 15 6 0.9653 -6.1076 0.0089 16 6 -0.4037 -6.6730 0.4108 17 7 -1.4561 -6.0442 -0.3989 18 6 -1.6734 -4.6418 -0.0047 19 1 -0.4850 0.8401 -0.0004 20 1 -0.8164 -1.7871 -0.0018 21 1 1.2333 -6.4623 -0.9863 22 1 1.7211 -6.4221 0.7286 23 1 -0.4138 -7.7503 0.2456 24 1 -0.5862 -6.4661 1.4653 25 1 -2.3150 -6.5713 -0.3481 26 1 -2.1124 -4.6037 0.9923 27 1 -2.3397 -4.1583 -0.7191 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149949.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:29 Heat of formation + Delta-G solvation = 11.509441 kcal Electronic energy + Delta-G solvation = -11713.743304 eV Core-core repulsion = 9663.401520 eV Total energy + Delta-G solvation = -2050.341784 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.26308 -37.54896 -35.26983 -32.46010 -31.05130 -29.61855 -27.07097 -24.18969 -22.84907 -21.28505 -19.32706 -18.67965 -17.69811 -16.50868 -16.06710 -15.49800 -15.13031 -14.38515 -14.05891 -13.91558 -13.62308 -13.24519 -12.96455 -12.74862 -12.49494 -12.22269 -11.95493 -11.49748 -11.35348 -11.08571 -9.42433 -8.85051 -8.59030 -8.35717 -6.06517 1.36175 1.40688 1.53896 1.94142 2.25555 2.58051 3.10718 3.40438 3.50731 4.18034 4.38323 4.57396 4.63615 4.68929 4.87076 4.97871 5.00741 5.21525 5.25380 5.54341 5.89781 6.00009 6.13291 6.30234 6.44931 6.76165 6.94099 7.13855 7.33017 7.64820 8.55601 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.080154 B = 0.010028 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.243364 B = 2791.602247 C = 3099.951703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.022 3.978 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.490 4.490 8 H 0.072 0.928 9 C 0.172 3.828 10 C -0.313 4.313 11 C -0.183 4.183 12 C -0.089 4.089 13 N -0.585 5.585 14 H 0.402 0.598 15 C -0.024 4.024 16 C 0.072 3.928 17 N -0.692 5.692 18 C 0.144 3.856 19 H 0.279 0.721 20 H 0.129 0.871 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.107 0.893 24 H 0.024 0.976 25 H 0.353 0.647 26 H 0.027 0.973 27 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 -7.305 1.036 7.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.525 4.525 8 H 0.091 0.909 9 C 0.061 3.939 10 C -0.336 4.336 11 C -0.191 4.191 12 C -0.197 4.197 13 N -0.186 5.186 14 H 0.237 0.763 15 C -0.063 4.063 16 C -0.057 4.057 17 N -0.325 5.325 18 C 0.015 3.985 19 H 0.089 0.911 20 H 0.147 0.853 21 H 0.084 0.916 22 H 0.093 0.907 23 H 0.125 0.875 24 H 0.043 0.957 25 H 0.172 0.828 26 H 0.045 0.955 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.569 -7.090 0.527 7.133 hybrid contribution 0.219 0.833 0.798 1.174 sum 0.788 -6.258 1.325 6.445 Atomic orbital electron populations 1.69907 1.08776 1.29040 1.38958 1.26633 0.95730 1.04065 0.92522 0.85009 0.78140 0.75231 0.79641 1.18674 1.19474 1.18613 1.18737 0.94098 0.89923 1.49763 0.90933 1.18482 0.92230 0.83504 0.99687 1.21376 0.94978 0.94519 1.22767 1.19472 0.94077 0.93941 1.11629 1.20265 0.87485 0.92150 1.19848 1.41672 1.07063 1.05611 1.64282 0.76280 1.20104 0.97900 0.87140 1.01118 1.21863 0.90727 0.98910 0.94249 1.60180 1.12043 1.02217 1.58019 1.20140 0.93276 0.87974 0.97130 0.91082 0.85346 0.91615 0.90740 0.87468 0.95723 0.82783 0.95527 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.40 10.26 21.85 0.22 -47.18 15 2 C 0.02 1.20 5.50 85.28 0.47 1.67 15 3 Si 1.00 40.61 29.56 68.60 2.03 42.64 15 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 7 C -0.49 -27.85 9.45 23.13 0.22 -27.63 15 8 H 0.07 3.84 7.85 -2.91 -0.02 3.82 15 9 C 0.17 9.95 6.90 38.97 0.27 10.22 15 10 C -0.31 -18.54 9.76 22.76 0.22 -18.32 15 11 C -0.18 -9.40 5.99 -20.09 -0.12 -9.52 15 12 C -0.09 -4.17 7.14 41.78 0.30 -3.88 15 13 N -0.59 -28.95 6.14 -174.18 -1.07 -30.02 15 14 H 0.40 17.02 8.96 -92.71 -0.83 16.18 15 15 C -0.02 -0.83 6.52 30.14 0.20 -0.64 15 16 C 0.07 2.14 6.50 86.46 0.56 2.70 15 17 N -0.69 -22.78 6.81 -515.80 -3.51 -26.29 15 18 C 0.14 5.92 6.93 85.53 0.59 6.51 15 19 H 0.28 14.34 8.30 -92.70 -0.77 13.57 15 20 H 0.13 8.11 5.71 -2.91 -0.02 8.10 15 21 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 22 H 0.07 2.23 8.14 -2.38 -0.02 2.21 15 23 H 0.11 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.02 0.76 8.06 -2.39 -0.02 0.74 15 25 H 0.35 8.93 8.90 -89.70 -0.80 8.13 15 26 H 0.03 1.05 8.14 -2.39 -0.02 1.04 15 27 H 0.07 2.72 8.14 -2.39 -0.02 2.70 15 Total: -1.00 -67.56 227.27 -0.05 -67.61 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.43 Total: 32.11 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 2.71 Total: -38.87 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -4.36 Total: -103.48 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -67.56 -0.05 -67.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149949.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.123 kcal (2) G-P(sol) polarization free energy of solvation -67.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds