Wall clock time and date at job start Mon Mar 30 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31021 * 1 3 3 Si 1.86805 * 119.99760 * 2 1 4 4 H 1.48495 * 109.47016 * 85.01665 * 3 2 1 5 5 H 1.48500 * 109.46830 * 205.01275 * 3 2 1 6 6 H 1.48496 * 109.47215 * 325.01413 * 3 2 1 7 7 C 1.39703 * 120.00304 * 179.72175 * 2 1 3 8 8 H 1.07998 * 119.99474 * 189.26066 * 7 2 1 9 9 C 1.41593 * 119.99794 * 9.25686 * 7 2 1 10 10 C 1.42067 * 126.63789 * 10.35421 * 9 7 2 11 11 N 1.30482 * 108.09260 * 179.97438 * 10 9 7 12 12 N 1.39575 * 109.22218 * 359.97438 * 11 10 9 13 13 C 1.34840 * 108.44954 * 359.79192 * 12 11 10 14 14 C 1.50763 * 124.63677 * 179.58356 * 13 12 11 15 15 C 1.53467 * 108.22705 * 344.86907 * 14 13 12 16 16 C 1.53154 * 109.11652 * 48.11220 * 15 14 13 17 17 C 1.46715 * 127.22607 * 180.02562 * 12 11 10 18 18 H 0.97001 * 120.00352 * 359.97438 * 1 2 3 19 19 H 1.07999 * 125.95546 * 359.97438 * 10 9 7 20 20 H 1.09000 * 109.86868 * 225.08517 * 14 13 12 21 21 H 1.08998 * 109.51850 * 104.45451 * 14 13 12 22 22 H 1.08998 * 109.53196 * 288.21301 * 15 14 13 23 23 H 1.09000 * 109.58747 * 168.03995 * 15 14 13 24 24 H 1.09003 * 109.44940 * 170.65762 * 16 15 14 25 25 H 1.08996 * 109.45861 * 50.72430 * 16 15 14 26 26 H 1.08998 * 109.57834 * 282.34616 * 17 12 11 27 27 H 1.09005 * 109.57301 * 42.59840 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.3863 2.1073 1.3947 5 1 3.5904 1.4121 -0.5920 6 1 1.4983 2.6200 -0.8027 7 6 2.0088 -1.2098 0.0059 8 1 3.0782 -1.2150 0.1564 9 6 1.3147 -2.4290 -0.1855 10 6 -0.0372 -2.5796 -0.5953 11 7 -0.3026 -3.8557 -0.6555 12 7 0.8359 -4.5793 -0.2972 13 6 1.8246 -3.7070 -0.0151 14 6 3.2135 -4.0980 0.4219 15 6 3.1854 -5.5719 0.8486 16 6 2.4671 -6.3919 -0.2273 17 6 0.9761 -6.0382 -0.2315 18 1 -0.4851 0.8400 0.0004 19 1 -0.7254 -1.7776 -0.8181 20 1 3.5259 -3.4778 1.2621 21 1 3.9067 -3.9688 -0.4093 22 1 2.6534 -5.6672 1.7952 23 1 4.2053 -5.9380 0.9655 24 1 2.5875 -7.4542 -0.0147 25 1 2.8971 -6.1663 -1.2031 26 1 0.5096 -6.4093 0.6811 27 1 0.4940 -6.4908 -1.0981 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261237039.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:25 Heat of formation + Delta-G solvation = 35.283646 kcal Electronic energy + Delta-G solvation = -11840.731055 eV Core-core repulsion = 9791.420198 eV Total energy + Delta-G solvation = -2049.310857 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.50209 -37.09535 -35.26011 -32.83164 -30.70729 -29.64547 -26.22776 -24.77035 -22.56394 -21.59006 -19.48044 -18.73267 -16.74163 -16.36622 -16.07667 -15.05050 -14.95232 -14.69065 -14.43150 -14.32298 -13.07541 -13.02445 -12.75789 -12.66204 -12.46104 -11.98791 -11.83176 -11.54148 -11.47475 -11.04035 -10.79507 -9.52642 -9.05693 -8.35624 -5.95977 1.29701 1.44674 1.55936 1.59089 2.23214 2.34245 2.39954 3.55140 3.80755 3.91859 4.07037 4.28609 4.47584 4.57324 4.74761 4.91866 4.94370 5.04503 5.14013 5.15651 5.37143 5.40857 5.70105 5.72451 6.11894 6.59125 6.78662 7.13971 7.18744 7.54933 8.68760 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.058049 B = 0.011809 C = 0.010038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.232357 B = 2370.444763 C = 2788.790790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.019 3.981 3 Si 0.984 3.016 4 H -0.269 1.269 5 H -0.261 1.261 6 H -0.274 1.274 7 C -0.470 4.470 8 H 0.070 0.930 9 C -0.064 4.064 10 C 0.002 3.998 11 N -0.361 5.361 12 N -0.385 5.385 13 C -0.077 4.077 14 C -0.027 4.027 15 C -0.114 4.114 16 C -0.120 4.120 17 C 0.130 3.870 18 H 0.277 0.723 19 H 0.174 0.826 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.102 0.898 24 H 0.122 0.878 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 -8.129 0.922 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.194 1.194 5 H -0.185 1.185 6 H -0.199 1.199 7 C -0.504 4.504 8 H 0.088 0.912 9 C -0.073 4.073 10 C -0.182 4.182 11 N -0.185 5.185 12 N -0.174 5.174 13 C -0.201 4.201 14 C -0.065 4.065 15 C -0.151 4.151 16 C -0.158 4.158 17 C 0.010 3.990 18 H 0.087 0.913 19 H 0.191 0.809 20 H 0.084 0.916 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.120 0.880 24 H 0.140 0.860 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.667 -8.984 0.675 10.644 hybrid contribution 0.303 1.683 0.102 1.713 sum 5.971 -7.302 0.777 9.464 Atomic orbital electron populations 1.69753 1.08577 1.28980 1.43250 1.26532 0.95599 1.03907 0.92757 0.85149 0.78802 0.76652 0.78698 1.19410 1.18457 1.19940 1.18929 0.94686 0.90257 1.46573 0.91203 1.18226 0.93114 0.92887 1.03107 1.24472 0.98583 0.92191 1.02947 1.76361 1.09480 1.06213 1.26436 1.48048 1.07313 1.05993 1.56033 1.21486 0.94159 0.89566 1.14910 1.19992 0.89251 0.97198 1.00103 1.21628 1.02305 0.93055 0.98161 1.21876 0.91481 1.02275 1.00184 1.21859 0.99539 0.75017 1.02605 0.91328 0.80891 0.91646 0.91395 0.92274 0.88004 0.86016 0.91572 0.90795 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.48 10.63 21.79 0.23 -49.25 15 2 C 0.02 1.04 5.45 85.17 0.46 1.50 15 3 Si 0.98 41.51 29.57 68.60 2.03 43.54 15 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 5 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 7 C -0.47 -26.87 9.21 23.45 0.22 -26.65 15 8 H 0.07 3.79 7.86 -2.91 -0.02 3.77 15 9 C -0.06 -3.68 5.87 -21.41 -0.13 -3.80 15 10 C 0.00 0.14 10.87 85.84 0.93 1.07 15 11 N -0.36 -19.71 12.51 -55.73 -0.70 -20.41 15 12 N -0.38 -18.11 4.02 -331.14 -1.33 -19.44 15 13 C -0.08 -3.79 6.70 42.21 0.28 -3.51 15 14 C -0.03 -0.99 6.11 30.02 0.18 -0.81 15 15 C -0.11 -3.06 5.98 30.80 0.18 -2.87 15 16 C -0.12 -2.97 5.92 30.73 0.18 -2.79 15 17 C 0.13 4.29 7.27 86.42 0.63 4.92 15 18 H 0.28 14.37 8.30 -92.71 -0.77 13.60 15 19 H 0.17 10.53 6.15 -2.91 -0.02 10.51 15 20 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 21 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.06 1.63 8.12 -2.39 -0.02 1.61 15 23 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.12 1.95 8.14 -2.39 -0.02 1.93 15 25 H 0.07 1.71 8.12 -2.39 -0.02 1.69 15 26 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.08 2.52 8.14 -2.38 -0.02 2.50 15 Total: -1.00 -68.72 228.84 4.34 -64.38 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 1.16 Total: 14.13 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 2.95 Total: -32.94 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -1.80 Total: -89.11 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -68.72 4.34 -64.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261237039.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.665 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds