Wall clock time and date at job start Mon Mar 30 2020 02:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.30451 * 125.63119 * 269.68717 * 10 9 7 12 12 C 1.34122 * 109.25020 * 179.91652 * 11 10 9 13 13 C 1.34673 * 107.94555 * 0.43212 * 12 11 10 14 14 N 1.35327 * 125.63765 * 90.00210 * 10 9 7 15 15 C 1.46969 * 142.23529 * 359.70991 * 14 10 9 16 16 C 1.54367 * 105.67322 * 162.98647 * 15 14 10 17 17 C 1.51239 * 143.08918 * 179.54968 * 13 12 11 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08001 * 126.02908 * 180.18235 * 12 11 10 22 22 H 1.09003 * 110.20648 * 282.03848 * 15 14 10 23 23 H 1.09002 * 110.21115 * 43.93542 * 15 14 10 24 24 H 1.09001 * 110.92014 * 267.74324 * 16 15 14 25 25 H 1.09003 * 110.92003 * 144.11481 * 16 15 14 26 26 H 1.09003 * 110.47123 * 315.38811 * 17 13 12 27 27 H 1.08999 * 110.46680 * 77.97941 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7197 -4.2213 -1.0732 12 6 3.5589 -5.1985 -0.6992 13 6 3.5818 -5.2332 0.6469 14 7 2.7425 -4.2489 1.0868 15 6 2.7103 -4.2111 2.5557 16 6 3.2880 -5.5650 3.0205 17 6 4.1893 -5.9570 1.8277 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 4.1148 -5.8463 -1.3609 22 1 3.3273 -3.3917 2.9248 23 1 1.6846 -4.0988 2.9071 24 1 2.4942 -6.2976 3.1658 25 1 3.8765 -5.4453 3.9302 26 1 4.1633 -7.0351 1.6685 27 1 5.2122 -5.6203 1.9961 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261241448.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:05 Heat of formation + Delta-G solvation = 54.742826 kcal Electronic energy + Delta-G solvation = -11620.913037 eV Core-core repulsion = 9572.445993 eV Total energy + Delta-G solvation = -2048.467044 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.68171 -35.99514 -33.28200 -31.09345 -29.55578 -27.88309 -25.45693 -22.96273 -21.74090 -19.83141 -18.86735 -16.59859 -15.95730 -15.46143 -14.43686 -13.71148 -13.44653 -12.94956 -12.61439 -12.43231 -12.29102 -11.90722 -11.39116 -11.29909 -10.99675 -10.71885 -10.69499 -9.90461 -9.44716 -9.15277 -8.78472 -8.47317 -7.37225 -6.08200 -4.11995 2.79682 3.28313 3.35935 3.41382 3.51729 3.98000 4.43795 4.47999 4.84666 4.92991 5.26683 5.30325 5.59555 5.68070 5.71012 5.72654 5.88725 6.07469 6.10227 6.43379 7.10446 7.26492 7.43255 7.61230 7.86958 8.03101 8.28233 8.90562 9.03566 9.51608 11.01662 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.051096 B = 0.010172 C = 0.009618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.855034 B = 2752.091115 C = 2910.634856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.094 3.906 10 C 0.285 3.715 11 N -0.503 5.503 12 C -0.015 4.015 13 C -0.089 4.089 14 N -0.477 5.477 15 C 0.108 3.892 16 C -0.130 4.130 17 C -0.044 4.044 18 H 0.263 0.737 19 H 0.032 0.968 20 H 0.052 0.948 21 H 0.157 0.843 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.988 -9.374 6.975 13.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.055 3.945 10 C 0.024 3.976 11 N -0.221 5.221 12 C -0.163 4.163 13 C -0.204 4.204 14 N -0.162 5.162 15 C -0.014 4.014 16 C -0.168 4.168 17 C -0.082 4.082 18 H 0.073 0.927 19 H 0.050 0.950 20 H 0.070 0.930 21 H 0.174 0.826 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.513 -8.897 6.284 12.208 hybrid contribution 0.676 0.736 0.777 1.266 sum 6.189 -8.161 7.061 12.441 Atomic orbital electron populations 1.69959 1.06005 1.26919 1.50353 1.24972 0.94914 0.99289 0.94998 0.86413 0.80060 0.83169 0.77680 1.19737 1.20696 1.20941 1.20988 0.93095 0.89624 1.51251 0.92509 1.17850 0.90807 0.86656 0.99190 1.24286 0.98352 0.96700 0.78232 1.70479 1.13875 1.10185 1.27520 1.21393 1.03265 1.01015 0.90583 1.22297 1.03367 0.99024 0.95684 1.46653 1.35291 1.27389 1.06823 1.22153 1.02972 0.98644 0.77665 1.22703 0.99658 0.96032 0.98454 1.20442 0.98316 0.99627 0.89839 0.92734 0.95010 0.92980 0.82594 0.89795 0.89613 0.90297 0.89312 0.90245 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 15 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.51 -14.80 9.09 -34.44 -0.31 -15.11 15 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 15 9 C 0.09 2.55 5.60 -29.03 -0.16 2.38 15 10 C 0.29 7.05 7.35 -155.20 -1.14 5.91 15 11 N -0.50 -12.39 11.25 -10.76 -0.12 -12.51 15 12 C -0.01 -0.30 11.87 -17.81 -0.21 -0.51 15 13 C -0.09 -1.65 7.51 -81.45 -0.61 -2.26 15 14 N -0.48 -9.81 3.61 -108.01 -0.39 -10.20 15 15 C 0.11 1.68 7.77 -3.07 -0.02 1.66 15 16 C -0.13 -1.46 7.15 -25.20 -0.18 -1.64 15 17 C -0.04 -0.56 6.84 -26.81 -0.18 -0.74 15 18 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 19 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.05 1.51 8.14 -51.93 -0.42 1.09 15 21 H 0.16 2.63 8.06 -52.49 -0.42 2.20 15 22 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.09 1.27 8.14 -51.93 -0.42 0.85 15 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.09 0.75 8.14 -51.93 -0.42 0.32 15 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 236.89 15.07 3.57 3.57 Total: -1.00 -32.82 236.89 -7.50 -40.32 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -3.35 Total: -3.57 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.92 Total: -8.70 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.23 Total: -48.43 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.82 -7.50 -40.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241448.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.059 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds