Wall clock time and date at job start Mon Mar 30 2020 02:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.30451 * 125.63119 * 269.68717 * 10 9 7 12 12 C 1.34122 * 109.25020 * 179.91652 * 11 10 9 13 13 C 1.34673 * 107.94555 * 0.43212 * 12 11 10 14 14 N 1.35327 * 125.63765 * 90.00210 * 10 9 7 15 15 C 1.46969 * 142.23529 * 359.70991 * 14 10 9 16 16 C 1.54367 * 105.67322 * 162.98647 * 15 14 10 17 17 C 1.51239 * 143.08918 * 179.54968 * 13 12 11 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08001 * 126.02908 * 180.18235 * 12 11 10 22 22 H 1.09003 * 110.20648 * 282.03848 * 15 14 10 23 23 H 1.09002 * 110.21115 * 43.93542 * 15 14 10 24 24 H 1.09001 * 110.92014 * 267.74324 * 16 15 14 25 25 H 1.09003 * 110.92003 * 144.11481 * 16 15 14 26 26 H 1.09003 * 110.47123 * 315.38811 * 17 13 12 27 27 H 1.08999 * 110.46680 * 77.97941 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7197 -4.2213 -1.0732 12 6 3.5589 -5.1985 -0.6992 13 6 3.5818 -5.2332 0.6469 14 7 2.7425 -4.2489 1.0868 15 6 2.7103 -4.2111 2.5557 16 6 3.2880 -5.5650 3.0205 17 6 4.1893 -5.9570 1.8277 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 4.1148 -5.8463 -1.3609 22 1 3.3273 -3.3917 2.9248 23 1 1.6846 -4.0988 2.9071 24 1 2.4942 -6.2976 3.1658 25 1 3.8765 -5.4453 3.9302 26 1 4.1633 -7.0351 1.6685 27 1 5.2122 -5.6203 1.9961 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261241448.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:05 Heat of formation + Delta-G solvation = 33.537410 kcal Electronic energy + Delta-G solvation = -11621.832573 eV Core-core repulsion = 9572.445993 eV Total energy + Delta-G solvation = -2049.386580 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.24499 -37.33089 -35.43935 -32.75990 -31.23102 -29.42022 -27.12512 -24.97191 -22.90794 -21.30349 -20.49773 -18.69811 -17.46288 -17.01632 -16.39240 -15.11979 -14.94411 -14.36300 -14.04322 -13.98716 -13.86844 -13.57057 -13.35285 -12.70187 -12.66175 -12.35706 -12.03783 -11.99701 -11.57227 -10.81809 -10.68466 -10.35045 -9.00090 -8.26829 -6.42410 1.22034 1.36303 1.38474 1.51401 2.04531 2.24066 2.41296 3.02877 3.35928 3.72489 3.91730 3.97757 4.20032 4.46438 4.46959 4.64814 4.86862 4.89892 5.02456 5.12017 5.19792 5.32088 5.56316 5.62690 5.96107 6.02893 6.44962 6.64870 7.26188 7.34437 8.81950 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.051096 B = 0.010172 C = 0.009618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.855034 B = 2752.091115 C = 2910.634856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.044 0.956 9 C 0.109 3.891 10 C 0.237 3.763 11 N -0.537 5.537 12 C -0.050 4.050 13 C -0.065 4.065 14 N -0.481 5.481 15 C 0.089 3.911 16 C -0.112 4.112 17 C -0.041 4.041 18 H 0.270 0.730 19 H 0.018 0.982 20 H 0.016 0.984 21 H 0.186 0.814 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.129 0.871 26 H 0.111 0.889 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.849 -10.154 8.804 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.062 0.938 9 C 0.070 3.930 10 C -0.024 4.024 11 N -0.256 5.256 12 C -0.197 4.197 13 C -0.181 4.181 14 N -0.165 5.165 15 C -0.032 4.032 16 C -0.149 4.149 17 C -0.079 4.079 18 H 0.079 0.921 19 H 0.036 0.964 20 H 0.035 0.965 21 H 0.203 0.797 22 H 0.105 0.895 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.147 0.853 26 H 0.129 0.871 27 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.366 -9.686 8.140 14.640 hybrid contribution 0.108 0.893 0.236 0.930 sum 7.474 -8.793 8.375 14.260 Atomic orbital electron populations 1.70063 1.07544 1.28336 1.50442 1.25890 0.95856 1.03026 0.94012 0.85298 0.78453 0.78253 0.78407 1.19584 1.19909 1.19208 1.21160 0.92587 0.91040 1.52248 0.93751 1.17409 0.90943 0.87934 0.96734 1.23529 1.00585 0.98064 0.80267 1.70309 1.14928 1.11525 1.28827 1.21947 1.03926 1.01296 0.92524 1.23268 1.00931 0.97446 0.96436 1.46898 1.34559 1.26828 1.08211 1.22668 1.03676 1.01961 0.74926 1.22774 0.99975 0.93021 0.99153 1.20745 0.99086 1.00816 0.87295 0.92112 0.96363 0.96527 0.79730 0.89536 0.89730 0.88890 0.85279 0.87111 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.01 13.29 21.45 0.28 -55.73 15 2 C 0.01 0.66 5.46 84.66 0.46 1.12 15 3 Si 0.97 45.14 29.54 68.60 2.03 47.16 15 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 7 C -0.53 -32.03 9.09 25.60 0.23 -31.79 15 8 H 0.04 2.71 7.74 -2.91 -0.02 2.69 15 9 C 0.11 6.27 5.60 29.10 0.16 6.44 15 10 C 0.24 12.18 7.35 138.05 1.01 13.19 15 11 N -0.54 -27.37 11.25 -187.96 -2.11 -29.48 15 12 C -0.05 -2.03 11.87 83.53 0.99 -1.04 15 13 C -0.06 -2.27 7.51 41.16 0.31 -1.97 15 14 N -0.48 -19.67 3.61 -495.63 -1.79 -21.46 15 15 C 0.09 2.59 7.77 86.75 0.67 3.27 15 16 C -0.11 -1.98 7.15 31.58 0.23 -1.75 15 17 C -0.04 -0.85 6.84 30.55 0.21 -0.64 15 18 H 0.27 15.12 8.31 -92.70 -0.77 14.35 15 19 H 0.02 1.06 8.14 -2.38 -0.02 1.04 15 20 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 21 H 0.19 6.00 8.06 -2.91 -0.02 5.97 15 22 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 23 H 0.08 2.46 8.14 -2.39 -0.02 2.44 15 24 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 25 H 0.13 1.36 8.14 -2.39 -0.02 1.34 15 26 H 0.11 1.72 8.14 -2.39 -0.02 1.70 15 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 15 Total: -1.00 -74.65 236.89 3.84 -70.82 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 1.15 Total: 1.86 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 4.28 Total: -13.17 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -3.62 Total: -106.67 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -74.65 3.84 -70.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241448.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.354 kcal (2) G-P(sol) polarization free energy of solvation -74.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds