Wall clock time and date at job start Mon Mar 30 2020 02:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99821 * 2 1 4 4 H 1.48499 * 109.47191 * 270.00296 * 3 2 1 5 5 H 1.48501 * 109.47139 * 29.99791 * 3 2 1 6 6 H 1.48498 * 109.47059 * 149.99656 * 3 2 1 7 7 C 1.37867 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00120 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.53006 * 110.43618 * 59.29277 * 9 7 2 11 11 F 1.39904 * 109.47089 * 298.91479 * 10 9 7 12 12 F 1.39900 * 109.46699 * 58.91161 * 10 9 7 13 13 C 1.54802 * 110.60350 * 181.92028 * 9 7 2 14 14 C 1.54994 * 102.09600 * 97.85076 * 13 9 7 15 15 O 1.44379 * 103.48934 * 37.02376 * 14 13 9 16 16 C 1.43748 * 106.97298 * 319.94150 * 15 14 13 17 17 H 0.97000 * 120.00073 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47239 * 178.91043 * 10 9 7 19 19 H 1.09010 * 110.90778 * 216.04836 * 13 9 7 20 20 H 1.08998 * 110.91158 * 339.64751 * 13 9 7 21 21 H 1.09001 * 110.61446 * 278.52022 * 14 13 9 22 22 H 1.09002 * 110.62008 * 155.52776 * 14 13 9 23 23 H 1.09008 * 109.87861 * 267.09077 * 16 15 14 24 24 H 1.09002 * 110.00071 * 146.01192 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.3504 -2.5961 -1.2325 11 9 -0.5837 -1.5548 -1.2107 12 9 1.1313 -2.4979 -2.3892 13 6 2.2330 -3.6949 0.0497 14 6 2.2349 -4.0517 1.5580 15 8 0.8649 -3.8327 1.9577 16 6 0.4182 -2.6411 1.2892 17 1 -0.4850 0.8400 -0.0004 18 1 -0.1717 -3.5529 -1.2268 19 1 1.8613 -4.5283 -0.5466 20 1 3.2277 -3.3954 -0.2804 21 1 2.9055 -3.3913 2.1078 22 1 2.5157 -5.0946 1.7054 23 1 0.5775 -1.7743 1.9308 24 1 -0.6392 -2.7278 1.0395 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261330423.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:23 Heat of formation + Delta-G solvation = -133.366951 kcal Electronic energy + Delta-G solvation = -13024.801810 eV Core-core repulsion = 10381.655433 eV Total energy + Delta-G solvation = -2643.146377 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.070 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -47.21359 -45.13344 -38.35204 -33.40251 -31.10093 -28.44469 -24.94209 -24.11121 -21.65978 -19.54638 -16.87498 -15.87504 -15.51770 -15.28601 -14.57111 -14.47376 -14.00503 -13.28818 -12.48245 -12.05515 -11.96956 -11.62895 -11.16865 -10.99568 -10.84247 -10.58266 -10.50594 -10.44766 -9.80692 -9.45246 -8.87504 -8.64729 -8.37478 -5.98735 -4.14586 3.28654 3.35230 3.37429 4.36126 4.91722 5.14533 5.28146 5.61264 5.65223 5.88564 6.03577 6.30978 6.37305 6.54667 6.65031 6.76292 6.99110 7.00644 7.29644 7.75377 7.82099 8.20022 8.78244 9.47303 10.93478 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.037226 B = 0.019535 C = 0.016620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.986626 B = 1432.952553 C = 1684.304356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.064 0.936 9 C 0.002 3.998 10 C 0.272 3.728 11 F -0.161 7.161 12 F -0.224 7.224 13 C -0.142 4.142 14 C 0.056 3.944 15 O -0.403 6.403 16 C 0.074 3.926 17 H 0.259 0.741 18 H 0.055 0.945 19 H 0.055 0.945 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 -4.567 0.195 4.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.082 0.918 9 C 0.001 3.999 10 C 0.218 3.782 11 F -0.142 7.142 12 F -0.205 7.205 13 C -0.180 4.180 14 C -0.021 4.021 15 O -0.323 6.323 16 C -0.002 4.002 17 H 0.070 0.930 18 H 0.073 0.927 19 H 0.074 0.926 20 H 0.094 0.906 21 H 0.074 0.926 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.237 -4.518 0.317 4.695 hybrid contribution 0.495 1.155 -0.360 1.307 sum 1.732 -3.363 -0.044 3.783 Atomic orbital electron populations 1.70458 1.05451 1.26179 1.45874 1.25076 0.95096 0.99516 0.94546 0.86476 0.79713 0.82960 0.78177 1.20576 1.21160 1.19870 1.20731 0.92822 0.88389 1.54428 0.91795 1.20427 0.92672 0.95744 0.91075 1.22200 0.83970 0.87905 0.84167 1.93186 1.65498 1.59302 1.96168 1.92827 1.77234 1.97213 1.53276 1.23096 1.01045 0.97660 0.96180 1.23317 0.84969 0.99414 0.94358 1.88700 1.26781 1.46542 1.70233 1.23259 0.97415 0.85797 0.93757 0.93006 0.92748 0.92603 0.90571 0.92607 0.90804 0.91354 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.40 8.77 55.43 0.49 -22.91 14 2 C 0.06 1.73 4.92 -17.82 -0.09 1.64 14 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 14 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 14 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 14 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 14 7 C -0.53 -14.00 7.61 -34.44 -0.26 -14.27 14 8 H 0.06 1.69 7.53 -52.49 -0.40 1.30 14 9 C 0.00 0.05 0.46 -154.13 -0.07 -0.02 14 10 C 0.27 6.54 3.96 37.16 0.15 6.69 14 11 F -0.16 -4.30 12.69 2.25 0.03 -4.27 14 12 F -0.22 -5.53 16.90 2.25 0.04 -5.49 14 13 C -0.14 -2.88 6.12 -24.73 -0.15 -3.03 14 14 C 0.06 1.07 7.72 38.21 0.29 1.36 14 15 O -0.40 -8.85 11.52 -35.23 -0.41 -9.25 14 16 C 0.07 1.76 6.06 37.73 0.23 1.99 14 17 H 0.26 6.94 8.31 -40.82 -0.34 6.61 14 18 H 0.06 1.15 8.13 -51.93 -0.42 0.73 14 19 H 0.06 1.03 7.86 -51.92 -0.41 0.63 14 20 H 0.08 1.51 7.68 -51.93 -0.40 1.11 14 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 14 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 14 23 H 0.07 1.76 7.38 -51.92 -0.38 1.38 14 24 H 0.07 1.56 7.53 -51.93 -0.39 1.17 14 LS Contribution 208.28 15.07 3.14 3.14 Total: -1.00 -28.41 208.28 -4.01 -32.42 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: -2.38 Total: -4.16 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 0.10 Total: -5.63 kcal Atomic # 7 Polarization: -23.40 SS G_CDS: 0.49 Total: -22.91 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.41 Total: -9.25 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -28.41 -4.01 -32.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330423.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.942 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds