Wall clock time and date at job start Mon Mar 30 2020 01:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47536 * 2 1 4 4 C 1.38667 * 120.41830 * 264.97918 * 3 2 1 5 5 C 1.38629 * 118.41832 * 180.02562 * 4 3 2 6 6 C 1.38223 * 119.16553 * 359.97438 * 5 4 3 7 7 N 1.31861 * 120.75979 * 359.73003 * 6 5 4 8 8 C 1.31886 * 121.72291 * 0.56157 * 7 6 5 9 9 C 1.50700 * 119.61373 * 179.71455 * 8 7 6 10 10 C 1.50702 * 109.46869 * 269.72555 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 H 1.09004 * 109.46548 * 59.99869 * 1 2 3 19 19 H 1.08996 * 109.47356 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47200 * 300.00555 * 1 2 3 21 21 H 1.09008 * 109.47279 * 239.99344 * 2 1 3 22 22 H 1.09004 * 109.46548 * 120.00131 * 2 1 3 23 23 H 1.07998 * 120.79221 * 0.03371 * 4 3 2 24 24 H 1.07999 * 120.42105 * 180.02562 * 5 4 3 25 25 H 1.07999 * 119.62442 * 179.97438 * 6 5 4 26 26 H 1.09004 * 109.47210 * 149.72848 * 9 8 7 27 27 H 1.08994 * 109.47551 * 29.72501 * 9 8 7 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3652 2.0478 -1.1912 5 6 2.8236 3.3552 -1.1430 6 6 2.9325 3.9860 0.0821 7 7 2.6014 3.3604 1.1946 8 6 2.1670 2.1152 1.1870 9 6 1.8078 1.4439 2.4875 10 6 3.0223 0.7477 3.0456 11 1 3.9605 0.7877 2.5122 12 6 2.9372 0.0648 4.2405 13 7 1.7948 0.0164 4.8902 14 14 4.4445 -0.7916 4.9360 15 1 5.5180 0.2076 5.1696 16 1 4.0918 -1.4491 6.2200 17 1 4.9220 -1.8147 3.9713 18 1 -0.3632 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 1.8934 -0.5140 -0.8900 22 1 1.8932 -0.5139 0.8900 23 1 2.2693 1.5300 -2.1341 24 1 3.0915 3.8746 -2.0512 25 1 3.2892 5.0044 0.1283 26 1 1.0181 0.7130 2.3132 27 1 1.4593 2.1926 3.1988 28 1 1.7349 -0.4643 5.7307 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261331903.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:45 Heat of formation + Delta-G solvation = 11.756909 kcal Electronic energy + Delta-G solvation = -11505.811608 eV Core-core repulsion = 9520.906466 eV Total energy + Delta-G solvation = -1984.905142 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.62565 -34.37047 -33.22837 -31.62659 -29.50812 -27.43240 -23.91574 -23.50954 -21.17544 -20.37503 -16.38590 -16.07198 -15.65157 -14.71867 -14.29278 -13.43622 -13.29988 -12.88144 -12.42898 -12.25274 -11.74515 -11.54807 -11.24088 -10.89629 -10.66182 -10.56453 -10.30007 -9.76478 -9.51224 -9.02191 -8.55796 -8.38191 -7.94389 -6.03503 -4.06094 1.84356 1.97077 3.33320 3.37293 3.40948 4.39391 4.59899 5.10960 5.28736 5.31919 5.48215 5.54483 5.63992 5.84230 5.93176 6.00526 6.21629 6.40367 6.50099 6.65362 6.70423 6.83475 7.01759 7.41646 7.60504 7.64172 7.92074 8.30687 8.89565 8.96378 9.56264 11.06869 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.039127 B = 0.011933 C = 0.010503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.453702 B = 2345.895923 C = 2665.376030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.136 4.136 4 C -0.083 4.083 5 C -0.205 4.205 6 C 0.087 3.913 7 N -0.485 5.485 8 C 0.175 3.825 9 C 0.057 3.943 10 C -0.506 4.506 11 H 0.053 0.947 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.896 3.104 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 H 0.044 0.956 19 H 0.054 0.946 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.097 0.903 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.142 0.858 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 1.576 -10.335 10.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.138 4.138 4 C -0.109 4.109 5 C -0.225 4.225 6 C -0.071 4.071 7 N -0.194 5.194 8 C 0.038 3.962 9 C 0.020 3.980 10 C -0.545 4.545 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 H 0.063 0.937 19 H 0.073 0.927 20 H 0.081 0.919 21 H 0.077 0.923 22 H 0.116 0.884 23 H 0.139 0.861 24 H 0.139 0.861 25 H 0.160 0.840 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.505 1.951 -9.372 9.586 hybrid contribution 0.861 -0.755 -0.517 1.256 sum 0.356 1.196 -9.888 9.967 Atomic orbital electron populations 1.21724 0.95322 1.01280 1.01680 1.20485 0.95681 0.92334 1.03423 1.20762 1.01625 0.97877 0.93508 1.21350 0.97202 0.94649 0.97674 1.21859 1.05315 0.96311 0.99057 1.22664 0.96621 0.99492 0.88291 1.67687 1.11068 1.10444 1.30212 1.22178 0.88976 0.88374 0.96642 1.18390 0.97611 0.95083 0.86959 1.20850 0.95504 1.32059 1.06042 0.92840 1.24952 0.96097 0.96441 0.96596 1.69941 1.24540 1.42493 1.16179 0.86594 0.83097 0.79708 0.78272 1.20191 1.21166 1.20197 0.93717 0.92730 0.91914 0.92313 0.88432 0.86099 0.86147 0.84016 0.93817 0.94501 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.70 37.16 0.36 -1.93 15 2 C -0.08 -1.45 5.38 -27.89 -0.15 -1.60 15 3 C -0.14 -2.68 5.15 -104.49 -0.54 -3.21 15 4 C -0.08 -1.39 9.84 -39.28 -0.39 -1.78 15 5 C -0.21 -3.28 10.11 -39.44 -0.40 -3.68 15 6 C 0.09 1.57 11.18 -17.54 -0.20 1.38 15 7 N -0.49 -11.00 10.27 -9.47 -0.10 -11.10 15 8 C 0.18 4.07 5.97 -82.59 -0.49 3.58 15 9 C 0.06 1.50 4.60 -29.03 -0.13 1.36 15 10 C -0.51 -14.31 8.68 -34.44 -0.30 -14.61 15 11 H 0.05 1.53 7.74 -52.49 -0.41 1.12 15 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 13 N -0.89 -26.23 13.29 55.43 0.74 -25.50 15 14 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 15 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 18 H 0.04 0.64 8.14 -51.93 -0.42 0.21 15 19 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.06 1.12 6.90 -51.93 -0.36 0.76 15 21 H 0.06 0.89 8.06 -51.92 -0.42 0.48 15 22 H 0.10 2.02 6.66 -51.93 -0.35 1.67 15 23 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 24 H 0.12 1.49 8.06 -52.49 -0.42 1.06 15 25 H 0.14 2.09 8.06 -52.49 -0.42 1.67 15 26 H 0.04 1.14 5.42 -51.93 -0.28 0.86 15 27 H 0.04 1.06 8.14 -51.93 -0.42 0.63 15 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 242.19 15.07 3.65 3.65 Total: -1.00 -30.43 242.19 -6.55 -36.98 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -3.48 Total: -1.82 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -2.33 Total: -18.87 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.64 Total: -36.59 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.43 -6.55 -36.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261331903.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.735 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds