Wall clock time and date at job start Mon Mar 30 2020 01:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47536 * 2 1 4 4 C 1.38667 * 120.41830 * 264.97918 * 3 2 1 5 5 C 1.38629 * 118.41832 * 180.02562 * 4 3 2 6 6 C 1.38223 * 119.16553 * 359.97438 * 5 4 3 7 7 N 1.31861 * 120.75979 * 359.73003 * 6 5 4 8 8 C 1.31886 * 121.72291 * 0.56157 * 7 6 5 9 9 C 1.50700 * 119.61373 * 179.71455 * 8 7 6 10 10 C 1.50702 * 109.46869 * 269.72555 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 H 1.09004 * 109.46548 * 59.99869 * 1 2 3 19 19 H 1.08996 * 109.47356 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47200 * 300.00555 * 1 2 3 21 21 H 1.09008 * 109.47279 * 239.99344 * 2 1 3 22 22 H 1.09004 * 109.46548 * 120.00131 * 2 1 3 23 23 H 1.07998 * 120.79221 * 0.03371 * 4 3 2 24 24 H 1.07999 * 120.42105 * 180.02562 * 5 4 3 25 25 H 1.07999 * 119.62442 * 179.97438 * 6 5 4 26 26 H 1.09004 * 109.47210 * 149.72848 * 9 8 7 27 27 H 1.08994 * 109.47551 * 29.72501 * 9 8 7 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3652 2.0478 -1.1912 5 6 2.8236 3.3552 -1.1430 6 6 2.9325 3.9860 0.0821 7 7 2.6014 3.3604 1.1946 8 6 2.1670 2.1152 1.1870 9 6 1.8078 1.4439 2.4875 10 6 3.0223 0.7477 3.0456 11 1 3.9605 0.7877 2.5122 12 6 2.9372 0.0648 4.2405 13 7 1.7948 0.0164 4.8902 14 14 4.4445 -0.7916 4.9360 15 1 5.5180 0.2076 5.1696 16 1 4.0918 -1.4491 6.2200 17 1 4.9220 -1.8147 3.9713 18 1 -0.3632 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 1.8934 -0.5140 -0.8900 22 1 1.8932 -0.5139 0.8900 23 1 2.2693 1.5300 -2.1341 24 1 3.0915 3.8746 -2.0512 25 1 3.2892 5.0044 0.1283 26 1 1.0181 0.7130 2.3132 27 1 1.4593 2.1926 3.1988 28 1 1.7349 -0.4643 5.7307 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261331903.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:45 Heat of formation + Delta-G solvation = -7.159349 kcal Electronic energy + Delta-G solvation = -11506.631879 eV Core-core repulsion = 9520.906466 eV Total energy + Delta-G solvation = -1985.725413 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.11759 -35.97177 -35.08245 -33.32903 -31.05422 -29.22836 -25.75683 -25.00139 -22.79554 -21.84936 -18.55740 -17.56686 -17.20217 -16.43474 -15.89590 -15.03555 -14.73489 -14.33708 -14.16061 -13.80466 -13.42803 -13.20151 -12.98663 -12.64165 -12.53822 -12.20726 -11.88699 -11.58242 -11.47577 -10.60457 -10.49551 -10.06039 -9.48579 -8.20748 -6.32390 0.39319 0.56151 1.38219 1.41374 1.49549 2.39187 3.06052 3.10570 3.70389 3.99978 4.08826 4.24340 4.25340 4.53477 4.59643 4.68952 4.88778 5.06285 5.08336 5.18875 5.27597 5.33106 5.46764 5.53119 5.66172 5.74004 6.01823 6.18246 6.76221 7.33244 7.38556 8.89469 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.039127 B = 0.011933 C = 0.010503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.453702 B = 2345.895923 C = 2665.376030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 C -0.145 4.145 4 C -0.077 4.077 5 C -0.182 4.182 6 C 0.072 3.928 7 N -0.529 5.529 8 C 0.133 3.867 9 C 0.070 3.930 10 C -0.521 4.521 11 H 0.044 0.956 12 C 0.009 3.991 13 N -0.927 5.927 14 Si 0.964 3.036 15 H -0.275 1.275 16 H -0.277 1.277 17 H -0.264 1.264 18 H 0.068 0.932 19 H 0.071 0.929 20 H 0.030 0.970 21 H 0.093 0.907 22 H 0.057 0.943 23 H 0.165 0.835 24 H 0.171 0.829 25 H 0.173 0.827 26 H 0.033 0.967 27 H -0.008 1.008 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 1.465 -13.044 13.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.202 4.202 6 C -0.085 4.085 7 N -0.239 5.239 8 C -0.003 4.003 9 C 0.032 3.968 10 C -0.559 4.559 11 H 0.063 0.937 12 C -0.190 4.190 13 N -0.566 5.566 14 Si 0.788 3.212 15 H -0.200 1.200 16 H -0.202 1.202 17 H -0.188 1.188 18 H 0.087 0.913 19 H 0.090 0.910 20 H 0.050 0.950 21 H 0.111 0.889 22 H 0.076 0.924 23 H 0.183 0.817 24 H 0.188 0.812 25 H 0.190 0.810 26 H 0.051 0.949 27 H 0.010 0.990 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.593 1.838 -12.087 12.241 hybrid contribution 0.509 -0.617 0.223 0.830 sum 1.102 1.221 -11.865 11.978 Atomic orbital electron populations 1.21673 0.94168 1.02313 1.01264 1.20472 0.96712 0.91480 1.03072 1.20914 1.01737 0.98511 0.93522 1.21836 0.95404 0.95055 0.97934 1.22389 1.02064 0.95870 0.99843 1.23273 0.96312 1.00796 0.88168 1.67500 1.12417 1.10726 1.33240 1.21689 0.92710 0.89554 0.96346 1.18042 0.96695 0.93713 0.88343 1.21089 0.95777 1.32513 1.06537 0.93749 1.25845 0.99249 0.97033 0.96826 1.70064 1.26672 1.43276 1.16620 0.85528 0.79070 0.78702 0.77927 1.19993 1.20156 1.18839 0.91284 0.91003 0.95043 0.88873 0.92396 0.81716 0.81163 0.80974 0.94881 0.98987 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 9.70 71.98 0.70 -3.59 15 2 C -0.08 -2.78 5.38 29.85 0.16 -2.62 15 3 C -0.14 -5.58 5.15 -19.78 -0.10 -5.68 15 4 C -0.08 -2.25 9.84 22.47 0.22 -2.03 15 5 C -0.18 -4.99 10.11 22.36 0.23 -4.76 15 6 C 0.07 2.45 11.18 84.68 0.95 3.40 15 7 N -0.53 -24.37 10.27 -183.89 -1.89 -26.26 15 8 C 0.13 6.37 5.97 42.54 0.25 6.63 15 9 C 0.07 3.91 4.60 29.10 0.13 4.05 15 10 C -0.52 -30.85 8.68 25.60 0.22 -30.63 15 11 H 0.04 2.63 7.74 -2.91 -0.02 2.61 15 12 C 0.01 0.52 5.46 84.66 0.46 0.99 15 13 N -0.93 -56.60 13.29 21.45 0.28 -56.31 15 14 Si 0.96 45.22 29.54 68.60 2.03 47.24 15 15 H -0.27 -12.72 7.11 99.48 0.71 -12.02 15 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 17 H -0.26 -11.76 7.11 99.48 0.71 -11.05 15 18 H 0.07 1.80 8.14 -2.38 -0.02 1.78 15 19 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 20 H 0.03 1.15 6.90 -2.39 -0.02 1.14 15 21 H 0.09 2.56 8.06 -2.38 -0.02 2.55 15 22 H 0.06 2.48 6.66 -2.38 -0.02 2.46 15 23 H 0.17 3.41 8.06 -2.91 -0.02 3.38 15 24 H 0.17 3.01 8.06 -2.91 -0.02 2.99 15 25 H 0.17 4.59 8.06 -2.91 -0.02 4.57 15 26 H 0.03 1.87 5.42 -2.38 -0.01 1.86 15 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 15 28 H 0.27 15.23 8.31 -92.70 -0.77 14.46 15 Total: -1.00 -70.00 242.19 4.78 -65.22 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.13 Total: 4.38 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.22 Total: -34.26 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.60 Total: -82.57 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -70.00 4.78 -65.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261331903.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.061 kcal (2) G-P(sol) polarization free energy of solvation -70.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds