Wall clock time and date at job start Mon Mar 30 2020 02:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00258 * 2 1 4 4 H 1.48494 * 109.46964 * 239.99872 * 3 2 1 5 5 H 1.48496 * 109.46867 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46978 * 119.99640 * 3 2 1 7 7 C 1.37874 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00524 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99802 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47193 * 180.02562 * 9 7 2 11 11 C 1.38185 * 119.96318 * 265.00433 * 10 9 7 12 12 C 1.38136 * 120.14750 * 180.25745 * 11 10 9 13 13 C 1.38993 * 120.06931 * 359.48754 * 12 11 10 14 14 N 1.39672 * 120.03483 * 180.26072 * 13 12 11 15 15 C 1.38750 * 119.93076 * 0.53049 * 13 12 11 16 16 C 1.38797 * 119.85145 * 359.72527 * 15 13 12 17 17 N 1.39668 * 120.03807 * 179.97438 * 16 15 13 18 18 H 0.97003 * 120.00112 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.46993 * 60.00342 * 9 7 2 20 20 H 1.09000 * 109.47160 * 300.00205 * 9 7 2 21 21 H 1.08002 * 119.92272 * 359.97187 * 11 10 9 22 22 H 1.08001 * 119.95985 * 179.72299 * 12 11 10 23 23 H 0.96993 * 120.00562 * 180.26737 * 14 13 12 24 24 H 0.97001 * 119.99844 * 0.27090 * 14 13 12 25 25 H 1.08001 * 120.07254 * 179.74979 * 15 13 12 26 26 H 0.96990 * 120.00055 * 180.02562 * 17 16 15 27 27 H 0.96998 * 119.99847 * 0.02728 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2302 -3.6446 0.0027 11 6 2.5995 -4.2380 -1.1894 12 6 3.4927 -5.2916 -1.1924 13 6 4.0313 -5.7515 0.0036 14 7 4.9386 -6.8134 -0.0008 15 6 3.6624 -5.1582 1.2024 16 6 2.7606 -4.1032 1.2024 17 7 2.3861 -3.5034 2.4069 18 1 -0.4850 0.8401 -0.0004 19 1 0.6240 -2.5575 -0.8881 20 1 0.6246 -2.5563 0.8919 21 1 2.1852 -3.8801 -2.1203 22 1 3.7758 -5.7561 -2.1254 23 1 5.3112 -7.1365 0.8344 24 1 5.1961 -7.2278 -0.8392 25 1 4.0764 -5.5164 2.1334 26 1 1.7556 -2.7665 2.4063 27 1 2.7567 -3.8240 3.2440 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306942261.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:07 Heat of formation + Delta-G solvation = 10.812810 kcal Electronic energy + Delta-G solvation = -11430.897106 eV Core-core repulsion = 9380.525114 eV Total energy + Delta-G solvation = -2050.371992 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.78036 -35.13193 -33.06705 -32.44035 -29.73876 -28.08109 -25.84668 -22.79164 -21.65705 -19.92124 -16.77358 -16.67601 -16.18711 -15.26755 -14.82432 -14.25475 -13.59089 -12.84576 -12.79280 -12.59016 -12.07801 -11.34823 -11.19366 -10.75839 -10.62048 -10.48637 -10.15136 -9.50525 -9.31074 -8.88370 -8.34240 -7.22032 -6.39340 -5.91031 -3.98492 2.42049 2.62034 3.35890 3.39995 3.43951 4.29525 4.48466 4.81198 4.89022 5.37782 5.71436 5.92475 6.23030 6.45691 6.57251 6.63273 7.00760 7.20339 7.39187 7.53313 7.70800 7.94549 8.01521 8.07181 8.21572 8.39161 8.50154 8.67317 9.08162 9.65225 11.13464 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.054425 B = 0.009557 C = 0.009299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.346370 B = 2929.165572 C = 3010.439480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.505 4.505 8 H 0.054 0.946 9 C 0.063 3.937 10 C -0.162 4.162 11 C -0.039 4.039 12 C -0.257 4.257 13 C 0.227 3.773 14 N -0.888 5.888 15 C -0.281 4.281 16 C 0.257 3.743 17 N -0.872 5.872 18 H 0.260 0.740 19 H 0.024 0.976 20 H 0.019 0.981 21 H 0.114 0.886 22 H 0.103 0.897 23 H 0.389 0.611 24 H 0.391 0.609 25 H 0.104 0.896 26 H 0.409 0.591 27 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.396 -9.561 1.943 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.026 3.974 10 C -0.168 4.168 11 C -0.059 4.059 12 C -0.281 4.281 13 C 0.125 3.875 14 N -0.429 5.429 15 C -0.309 4.309 16 C 0.150 3.850 17 N -0.411 5.411 18 H 0.070 0.930 19 H 0.042 0.958 20 H 0.037 0.963 21 H 0.132 0.868 22 H 0.121 0.879 23 H 0.216 0.784 24 H 0.218 0.782 25 H 0.122 0.878 26 H 0.241 0.759 27 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 6.182 -9.376 1.912 11.392 hybrid contribution 0.719 0.842 0.319 1.152 sum 6.901 -8.534 2.230 11.200 Atomic orbital electron populations 1.69951 1.05948 1.26649 1.51127 1.25017 0.94810 0.99045 0.95562 0.86670 0.79551 0.83220 0.78641 1.20278 1.21424 1.20375 1.21161 0.93020 0.90186 1.49995 0.92724 1.18021 0.92303 0.89566 0.97484 1.19940 1.04636 1.01474 0.90705 1.20544 0.94817 0.93261 0.97276 1.20183 1.07889 1.04730 0.95296 1.17288 0.89244 0.87571 0.93443 1.42316 1.51579 1.38675 1.10284 1.19725 1.10122 1.05009 0.96067 1.17343 0.91009 0.89897 0.86731 1.42594 1.52819 1.40828 1.04824 0.92989 0.95812 0.96278 0.86822 0.87889 0.78422 0.78226 0.87770 0.75949 0.79000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 15 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.51 -14.22 9.09 -34.44 -0.31 -14.53 15 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.06 1.65 4.53 -29.03 -0.13 1.52 15 10 C -0.16 -3.70 5.09 -104.38 -0.53 -4.23 15 11 C -0.04 -0.82 9.66 -39.64 -0.38 -1.20 15 12 C -0.26 -4.68 9.89 -39.34 -0.39 -5.07 15 13 C 0.23 3.90 6.75 -83.82 -0.57 3.33 15 14 N -0.89 -11.24 9.09 32.40 0.29 -10.94 15 15 C -0.28 -5.09 9.74 -39.19 -0.38 -5.47 15 16 C 0.26 5.26 6.73 -83.82 -0.56 4.69 15 17 N -0.87 -15.99 8.99 32.40 0.29 -15.70 15 18 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 19 H 0.02 0.66 8.05 -51.93 -0.42 0.24 15 20 H 0.02 0.51 6.80 -51.93 -0.35 0.16 15 21 H 0.11 2.29 8.06 -52.49 -0.42 1.86 15 22 H 0.10 1.63 8.06 -52.49 -0.42 1.21 15 23 H 0.39 4.11 8.84 -40.82 -0.36 3.75 15 24 H 0.39 4.13 8.84 -40.82 -0.36 3.77 15 25 H 0.10 1.63 8.06 -52.49 -0.42 1.21 15 26 H 0.41 8.17 6.93 -40.82 -0.28 7.88 15 27 H 0.38 5.67 8.84 -40.82 -0.36 5.31 15 LS Contribution 237.70 15.07 3.58 3.58 Total: -1.00 -30.79 237.70 -6.42 -37.21 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -2.95 Total: 14.34 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -3.36 Total: -19.46 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 1.32 Total: -52.42 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.79 -6.42 -37.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306942261.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.022 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds